Conserved Protein Domain Family
Fip1

?
pfam05182: Fip1 (this model, PSSM-Id:282968 is obsolete and has been replaced by 461573)
Fip1 motif
This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor.
Statistics
?
PSSM-Id: 282968
Aligned: 99 rows
Threshold Bit Score: 62.9432
Created: 25-Jun-2015
Updated: 5-Aug-2015
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q0IER5        201 EFSIDSL--E-E--KPWRKPGADITDYFNYGFNEETWRAYCERQKRM 242  yellow fever mosquito
Q5KHE4        248 DIDLSLFegS-G--QPWRQPGAVVSDWFNFGFDEHTFPKWVRYRTEM 291  Cryptococcus neoformans
Q4P9N4        559 DIDIENL--A-E--KPWRRYGADLTDYFNYGFNEETWSLWRGKKERM 600  Ustilago maydis
EKD02446      177 DVDVAQF--E-GsgQMWRRPGSDISDWFNYGFDEVTYPKFLKYRQDM 220  Trichosporon asahii var. asahii CBS 8904
ETS60105      447 DIDLESL--A-D--KPWRRYGADLTDYFNYGFSEDSWSVWRAKKEHM 488  Pseudozyma aphidis DSM 70725
CEL53153      267 EVDLESL--S-A--KSWRRPGANISDWFNYGFDEISWETYCMTRKKL 308  Rhizoctonia solani AG-1 IB
XP_007357335  240 nLDLAAL--ApD--KPWRRPGADISDWFNYGFDEVTWEAYVYRRKEV 282  Auricularia delicata TFB-10046 SS5
XP_003037006  147 DLDLAAL--A-D--KPWRRPGADLSDWFNYGFDEISWEAYCYRRRDL 188  Schizophyllum commune H4-8
XP_002398061    9 EVDISAM--S-E--KPWRRPGSDISDWFNYGFDEISWEAYCYRRREM 50   Moniliophthora perniciosa FA553
CCA67157      155 DVDIAAL--E-S--KAWRRPGADLSDWFNYGFDEISWEAYAARRKQL 196  Piriformospora indica DSM 11827
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap