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ifi44f1 interferon induced protein 44f1 [ Danio rerio (zebrafish) ]

Gene ID: 555357, updated on 2-Nov-2024

Summary

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Official Symbol
ifi44f1provided by ZNC
Official Full Name
interferon induced protein 44f1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-617
See related
Ensembl:ENSDARG00000071361 AllianceGenome:ZFIN:ZDB-GENE-050208-617
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-197g15.10
Summary
Predicted to enable GTP binding activity. Predicted to be involved in immune response. Orthologous to several human genes including IFI44L (interferon induced protein 44 like). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ifi44f1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (17455654..17459620, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (17428638..17434633, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 163 member Ab Neighboring gene RAB GTPase activating protein 1-like Neighboring gene G protein-coupled receptor 52 Neighboring gene si:ch211-197g15.9 Neighboring gene interferon induced protein 44f3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Excessive R-loops trigger an inflammatory cascade leading to increased HSPC production. Weinreb JT, et al. Dev Cell, 2021 Mar 8. PMID 33651979, Free PMC Article
  2. IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity. Levraud JP, et al. J Immunol, 2019 Dec 15. PMID 31732531
  3. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
interferon induced protein 44f1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128684.1 → NP_001122156.1  interferon induced protein 44f1

    See identical proteins and their annotated locations for NP_001122156.1

    Status: PROVISIONAL

    Source sequence(s)
    BC163657
    UniProtKB/TrEMBL
    B3DJY8
    Related
    ENSDARP00000121020.1, ENSDART00000142267.2
    Conserved Domains (2) summary
    cd00882
    Location:231 → 418
    Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
    pfam07534
    Location:41 → 180
    TLD; TLD

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    17455654..17459620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353145.3 → XP_017208634.1  interferon induced protein 44f1 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z430
Nucleotide Protein Strain
Heading Accession and Version

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