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LOC5505006 aspartyl/asparaginyl beta-hydroxylase [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5505006, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5505006
Gene description
aspartyl/asparaginyl beta-hydroxylase
Locus tag
NEMVEDRAFT_v1g173452
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5505006 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 11 NC_064044.1 (4463907..4478034, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834162.1 (96818..118326, complement)

Chromosome 11 - NC_064044.1Genomic Context describing neighboring genes Neighboring gene probable glutathione S-transferase gst-36 Neighboring gene peptidyl-tRNA hydrolase 2, mitochondrial Neighboring gene exostosin-1 Neighboring gene uncharacterized LOC116612667 Neighboring gene dynactin subunit 4 Neighboring gene clavesin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064044.1 Reference jaNemVect1.1

    Range
    4463907..4478034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032373392.2 → XP_032229283.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A7SR93
    Conserved Domains (3) summary
    COG0457
    Location:111 → 317
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:242 → 270
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:381 → 534
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_032373391.2 → XP_032229282.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A7SR93
    Conserved Domains (3) summary
    COG0457
    Location:111 → 317
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:242 → 270
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:381 → 534
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_001625822.3 → XP_001625872.2  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A7SR93
    Conserved Domains (3) summary
    COG0457
    Location:116 → 322
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:247 → 275
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:386 → 539
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
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