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BCLAF1 BCL2 associated transcription factor 1 [ Bos taurus (domestic cattle) ]

Gene ID: 540648, updated on 4-Oct-2024

Summary

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Official Symbol
BCLAF1provided by VGNC
Official Full Name
BCL2 associated transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:26451
See related
Ensembl:ENSBTAG00000007802
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See BCLAF1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (74256679..74287573, complement)

Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104969602 Neighboring gene phosphodiesterase 7B Neighboring gene mitochondrial fission regulator 2 Neighboring gene uncharacterized LOC112448068 Neighboring gene zinc finger protein 639-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC139150

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bcl-2-associated transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098117.1 → NP_001091586.1  bcl-2-associated transcription factor 1

    See identical proteins and their annotated locations for NP_001091586.1

    Status: PROVISIONAL

    Source sequence(s)
    BC140498
    UniProtKB/TrEMBL
    A0A3Q1LVH1, A5D7B8
    Conserved Domains (2) summary
    pfam15440
    Location:157 → 746
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cl09653
    Location:828 → 893
    Btz; CASC3/Barentsz eIF4AIII binding

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    74256679..74287573 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005210976.5 → XP_005211033.1  bcl-2-associated transcription factor 1 isoform X4

    See identical proteins and their annotated locations for XP_005211033.1

    UniProtKB/TrEMBL
    A0A3Q1LVH1
    Conserved Domains (1) summary
    pfam15440
    Location:155 → 744
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

  2. XM_005210974.5 → XP_005211031.1  bcl-2-associated transcription factor 1 isoform X2

    See identical proteins and their annotated locations for XP_005211031.1

    UniProtKB/TrEMBL
    A0A3Q1LVH1, F1MQU4
    Related
    ENSBTAP00000052174.3, ENSBTAT00000052712.4
    Conserved Domains (2) summary
    pfam15440
    Location:155 → 744
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cl09653
    Location:826 → 891
    Btz; CASC3/Barentsz eIF4AIII binding

  3. XM_005210975.5 → XP_005211032.1  bcl-2-associated transcription factor 1 isoform X3

    See identical proteins and their annotated locations for XP_005211032.1

    UniProtKB/TrEMBL
    A0A3Q1LVH1
    Related
    ENSBTAP00000061396.2, ENSBTAT00000077730.2
    Conserved Domains (1) summary
    pfam15440
    Location:157 → 746
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

  4. XM_024996803.2 → XP_024852571.1  bcl-2-associated transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LVH1
    Conserved Domains (2) summary
    pfam15440
    Location:157 → 746
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cl09653
    Location:828 → 893
    Btz; CASC3/Barentsz eIF4AIII binding

RNA

  1. XR_009495802.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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