SNX4 sorting nexin 4 [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: SNX4provided by VGNC
Official Full Name: sorting nexin 4provided by VGNC
Primary source: VGNC:VGNC:35111
See related: BGD:BT13550; Ensembl:ENSBTAG00000011383
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2023_09	current	ARS-UCD2.0 (GCF_002263795.3)	1	NC_037328.1 (69893690..69946602, complement)

Chromosome 1 - NC_037328.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables phosphatidylinositol binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein transport	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: sorting nexin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001080281.2 → NP_001073750.1 sorting nexin-4

See identical proteins and their annotated locations for NP_001073750.1

Status: PROVISIONAL

Source sequence(s)

BC126650

UniProtKB/Swiss-Prot

A1A4L0

UniProtKB/TrEMBL

A0A3Q1MI68

Related

ENSBTAP00000015120.5, ENSBTAT00000015120.6

Conserved Domains (2) summary

cd06864
Location:58 → 184

PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4

cd07622
Location:205 → 448

BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

Range

69893690..69946602 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_010801175.4 → XP_010799477.1 sorting nexin-4 isoform X2

See identical proteins and their annotated locations for XP_010799477.1

UniProtKB/TrEMBL

A0A3Q1MI68

Conserved Domains (3) summary

cd06864
Location:11 → 137

PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4

cd07622
Location:158 → 401

BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

pfam11221
Location:285 → 351

Med21; Subunit 21 of Mediator complex
XM_010801174.2 → XP_010799476.1 sorting nexin-4 isoform X1

See identical proteins and their annotated locations for XP_010799476.1

UniProtKB/TrEMBL

A0A3Q1MI68

Conserved Domains (3) summary

cd06864
Location:16 → 142

PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4

cd07622
Location:163 → 406

BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

pfam11221
Location:290 → 356

Med21; Subunit 21 of Mediator complex