U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496628, updated on 25-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
pomgnt2provided by Xenbase
Official Full Name
protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)provided by Xenbase
Primary source
Xenbase:XB-GENE-973748
See related
Ensembl:ENSXETG00000022021
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ago61; gtdc2; c3orf39
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pomgnt2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (51125511..51138188)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (73058615..73071293, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene anoctamin 10 Neighboring gene SNF related kinase Neighboring gene uncharacterized LOC108647908 Neighboring gene golgi associated kinase 1A Neighboring gene solute carrier family 26 member 4 like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein O-acetylglucosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within neuron migration ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein O-linked glycosylation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein O-linked mannosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein O-linked mannosylation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
Names
glycosyltransferase
glycosyltransferase-like domain containing 2
glycosyltransferase-like domain-containing protein 2
NP_001011203.1
XP_012820049.1
XP_012820050.1
XP_012820051.1
XP_017950117.1
XP_031759198.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011203.1 → NP_001011203.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    See identical proteins and their annotated locations for NP_001011203.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ868538
    UniProtKB/Swiss-Prot
    A4IIA6, Q28HA5, Q5NDE6
    UniProtKB/TrEMBL
    A0A803K6R6, A0A8J1JMT6
    Conserved Domains (1) summary
    pfam04577
    Location:263 → 395
    DUF563; Protein of unknown function (DUF563)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    51125511..51138188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964596.3 → XP_012820050.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012820050.1

    UniProtKB/Swiss-Prot
    A4IIA6, Q28HA5, Q5NDE6
    UniProtKB/TrEMBL
    A0A803K6R6, A0A8J1JMT6
    Related
    ENSXETP00000104148.1, ENSXETT00000108690.1
    Conserved Domains (1) summary
    pfam04577
    Location:263 → 395
    DUF563; Protein of unknown function (DUF563)

  2. XM_012964597.3 → XP_012820051.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012820051.1

    UniProtKB/Swiss-Prot
    A4IIA6, Q28HA5, Q5NDE6
    UniProtKB/TrEMBL
    A0A803K6R6, A0A8J1JMT6
    Conserved Domains (1) summary
    pfam04577
    Location:263 → 395
    DUF563; Protein of unknown function (DUF563)

  3. XM_012964595.3 → XP_012820049.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_012820049.1

    UniProtKB/Swiss-Prot
    A4IIA6, Q28HA5, Q5NDE6
    UniProtKB/TrEMBL
    A0A803K6R6, A0A8J1JMT6
    Conserved Domains (1) summary
    pfam04577
    Location:263 → 395
    DUF563; Protein of unknown function (DUF563)

  4. XM_031903338.1 → XP_031759198.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    A4IIA6, Q28HA5, Q5NDE6
    UniProtKB/TrEMBL
    A0A803K6R6, A0A8J1JMT6
    Conserved Domains (1) summary
    pfam04577
    Location:263 → 395
    DUF563; Protein of unknown function (DUF563)

  5. XM_018094628.2 → XP_017950117.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    A4IIA6, Q28HA5, Q5NDE6
    UniProtKB/TrEMBL
    A0A803K6R6, A0A8J1JMT6
    Related
    ENSXETP00000106685.1, ENSXETT00000116612.1
    Conserved Domains (1) summary
    pfam04577
    Location:263 → 395
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5NDE6.1 GenPept UniProtKB/Swiss-Prot:Q5NDE6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.