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fip1l1.S factor interacting with PAPOLA and CPSF1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494780, updated on 4-Nov-2024

Summary

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Official Symbol
fip1l1.S
Official Full Name
factor interacting with PAPOLA and CPSF1 S homeolog
Primary source
Xenbase:XB-GENE-985503
Locus tag
XELAEV_18009057mg
See related
EnsemblRapid:ENSXLAG00005028759 AllianceGenome:Xenbase:XB-GENE-985503
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fip1l1
Summary
Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fip1l1.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (28783686..28827806)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (28675595..28719778)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108706589 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene RAS like family 11 member B S homeolog Neighboring gene ligand of numb-protein X 1 S homeolog Neighboring gene cysteine rich hydrophobic domain 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
factor interacting with PAPOLA and CPSF1 S homeolog
Names
FIP1 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094614.1 → NP_001088083.1  factor interacting with PAPOLA and CPSF1 S homeolog

    See identical proteins and their annotated locations for NP_001088083.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124845
    UniProtKB/TrEMBL
    A0AUS9, Q63ZL7
    Related
    ENSXLAP00005085964.1, ENSXLAT00005087626.1
    Conserved Domains (1) summary
    pfam05182
    Location:165 → 207
    Fip1; Fip1 motif

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    28783686..28827806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575951.1 → XP_041431885.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LT39, A0A974I0M6
    Conserved Domains (1) summary
    cl02162
    Location:159 → 216
    Fip1; Fip1 motif

  2. XM_041575945.1 → XP_041431879.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LRH3, A0A974I0M6
    Conserved Domains (1) summary
    cl02162
    Location:161 → 218
    Fip1; Fip1 motif

  3. XM_041575959.1 → XP_041431893.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1LQQ5, A0A974I0M6
    Conserved Domains (1) summary
    cl02162
    Location:161 → 218
    Fip1; Fip1 motif

  4. XM_018238244.2 → XP_018093733.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J0U286, A0A974I0M6

  5. XM_041575980.1 → XP_041431914.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X8

    UniProtKB/TrEMBL
    A0A8J1LRK9, A0A974I0M6
    Conserved Domains (1) summary
    cl02162
    Location:159 → 216
    Fip1; Fip1 motif

  6. XM_041575952.1 → XP_041431886.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LS26, A0A974I0M6
    Related
    ENSXLAP00005085872.1, ENSXLAT00005087534.1
    Conserved Domains (1) summary
    cl02162
    Location:161 → 218
    Fip1; Fip1 motif

  7. XM_018238250.2 → XP_018093739.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J0U291, A0A974I0M6
    Related
    ENSXLAP00005086055.1, ENSXLAT00005087717.1

  8. XM_041575972.1 → XP_041431906.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1LS45, A0A974I0M6
    Conserved Domains (1) summary
    cl02162
    Location:159 → 216
    Fip1; Fip1 motif

  9. XM_041575985.1 → XP_041431919.1  factor interacting with PAPOLA and CPSF1 S homeolog isoform X9

    UniProtKB/TrEMBL
    A0A8J1LRL4, Q63ZL7
    Conserved Domains (1) summary
    cl02162
    Location:70 → 127
    Fip1; Fip1 motif
Nucleotide Protein Strain
Heading Accession and Version

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