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NMD3 NMD3 ribosome export adaptor [ Canis lupus familiaris (dog) ]

Gene ID: 488137, updated on 17-Aug-2024

Summary

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Official Symbol
NMD3provided by VGNC
Official Full Name
NMD3 ribosome export adaptorprovided by VGNC
Primary source
VGNC:VGNC:43856
See related
Ensembl:ENSCAFG00845028473
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See NMD3 in Genome Data Viewer
Location:
chromosome: 34
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 34 NC_051838.1 (27265465..27297756)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 34 NC_006616.4 (31249190..31281491)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 34 NC_049255.1 (27427179..27459486)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 34 NC_049294.1 (27194216..27226521)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 34 NC_049775.1 (27153843..27186146)

Chromosome 34 - NC_051838.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 1 Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein SA-like Neighboring gene uncharacterized LOC111093890 Neighboring gene uncharacterized LOC111093948

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosomal large subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal export protein NMD3
Names
NMD3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051838.1 Reference ROS_Cfam_1.0

    Range
    27265465..27297756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445965.1 → XP_038301893.1  60S ribosomal export protein NMD3

    UniProtKB/TrEMBL
    A0A8C0LAK7, A0A8C0NDT3, A0A8I3S6T1
    Related
    ENSCAFP00845039639.1, ENSCAFT00845050562.1
    Conserved Domains (1) summary
    pfam04981
    Location:17 → 246
    NMD3; NMD3 family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049294.1 Alternate UMICH_Zoey_3.1

    Range
    27194216..27226521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520158.1 → XP_038376086.1  60S ribosomal export protein NMD3

    Conserved Domains (1) summary
    pfam04981
    Location:17 → 246
    NMD3; NMD3 family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049775.1 Alternate UNSW_CanFamBas_1.0

    Range
    27153843..27186146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648204.1 → XP_038504132.1  60S ribosomal export protein NMD3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049255.1 Alternate UU_Cfam_GSD_1.0

    Range
    27427179..27459486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038583787.1 → XP_038439715.1  60S ribosomal export protein NMD3

    UniProtKB/TrEMBL
    A0A8C0LAK7, A0A8C0NDT3, A0A8I3S6T1
    Conserved Domains (1) summary
    pfam04981
    Location:17 → 246
    NMD3; NMD3 family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006616.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    31249190..31281491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_545261.6 → XP_545261.3  60S ribosomal export protein NMD3

    UniProtKB/TrEMBL
    A0A8P0TBV4
    Conserved Domains (3) summary
    COG1499
    Location:9 → 388
    NMD3; NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
    pfam04981
    Location:17 → 246
    NMD3; NMD3 family
    cl00266
    Location:379 → 491
    HGTP_anticodon; HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for ...
Nucleotide Protein
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