Conserved Protein Domain Family
NMD3

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COG1499: NMD3 (this model, PSSM-Id:224416 is obsolete and has been replaced by 441108)
NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 224416
Aligned: 17 rows
Threshold Bit Score: 233.05
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6321964   11 HQNAATLLCCNCGTPIDg--STGLVMCYDCIKLtVDITQGIPREANISFCRNCErFLQPPGQWIR-----------AELE 77  baker's yeast
14600940   6 WLGAMAGVCPSCGRTLEg--SGVRRLCPDCYVE-RYGVARIPEAVKFVYCRDCG-AYRYQGGWNEg----------LESV 71  Aeropyrum pernix
19173259   1 -----MILCCKCGIPIE---PRLMNMCDRCLVTeVTISSKVKRNLAVERCRGCErYLHPPKSWME-----------FSWG 61  Encephalitozoon cun...
14521191   1 -----MRFCYRCGISEEeggPLINGLCQVCFRK-ENPILVLPQEVNTELCQNCG-SYKKRGVWVDpknyelealifEVAE 73  Pyrococcus abyssi
18312784   3 GRDVAKIPCPFCGRLVD---RLIEGMCEDCYVE-RHPLVKVK-ETRVLRCRYCG-ALFIRGRWIR------------E-G 63  Pyrobaculum aerophilum
14590835   1 -MVRDMRFCYRCGISEEeggPLINGLCQVCFRK-ENPVLLLPSEINTELCQNCG-SYKKRGVWVDpknyelealifEVAE 77  Pyrococcus horikoshii
1175492   16 epIASTILCCECGVPTP---PNAAAMCMDCIKMtTDITSGIPRESTVNHCRECErYMQPPNNWMI-----------APLE 81  fission yeast
15899136   1 MKFMSGKFCVLCGKQNV---DLIDSLCVDCYVK-SKKLIETPKRVTGKYCKICG-AQWIRGKWIR------------TSA 63  Sulfolobus solfatar...
13541309   1 ------MKCVVCGRNE----AVEHGMCSSCIYD-NTNVENIG-PVSLVFCPKCG-SIRIGKKWYR-----------DSYG 56  Thermoplasma volcanium
16082026   1 ------MKCVVCGKNE----AVEHGVCSQCLFD-RANIENIG-NVNIAICPKCG-SVRIGKKWYR-----------EDYA 56  Thermoplasma acidop...
6321964   78 SRELLAICLRRLKGLTKVR---------LVDASFIWTEP-------------HSRRIRIKLTVQGEAMT-NTIIQQTFEV 134 baker's yeast
14600940  72 EDTLREYLHMVLTVRMKPTe--------AVEEAWVESIElv---------qaFAGPGVYTALVTVAGRAgGQSLVERKII 134 Aeropyrum pernix
19173259  62 SKEFLLFLIRRNKTLNGLC---------IVDSNFVYTEP-------------NSKRIVVALVVR------ECGVEQPLEM 113 Encephalitozoon cun...
14521191  74 NALLETLEDNLKVKEFEIVdweeldeirEIPVGKAFVAYrvadyhieyfpaiVIYEVRAKARIH-ELQI-EPHDET-STV 150 Pyrococcus abyssi
18312784  64 RGGVEELAAKVLSDKASVSg--------AIERIEASQSY---------------DGLTARVVVKGSPHPsIEPRLFTYVL 120 Pyrobaculum aerophilum
14590835  78 NALLEALEDNLKVKDFEVVnweeldeisEIPVGKAFVAYrvvdyhieyfpaiVIYEVRSKARIH-ELQV-EPHDER-TTV 154 Pyrococcus horikoshii
1175492   82 SRELMAICLKKLRGLNQVR---------LVDANFIWTEP-------------HSRRIKVKLTVQKEAFT-NTILQQSFQV 138 fission yeast
15899136  64 TSLASVVEDIIARELGSKMri------dKNVDEFAFDIKsi----------wKDPSGNSFATIEFRGKVrGKSFSQEAVI 127 Sulfolobus solfatar...
13541309  57 NKLLPMLLDEVKCSDVNARi-------sGDEKGIFFDEK--------------NKQIILPVTIK-RSNM-KDKIQN-VAI 112 Thermoplasma volcanium
16082026  57 DHLLPLIMDEVKCSDPEAKi-------sGDPKSVYFDES--------------NRNLVLKVNIT-RDHM-DPKVQT-VSV 112 Thermoplasma acidop...
6321964  135 EYIVIAMQCPDCARsYTTNTWRATVQIRQKVPHKR------TFLFLEQLILKHNAHVDTISISEA--K-DGLDFFYAQKN 205 baker's yeast
14600940 135 TVEASQALCPRCTArSTGRGFEAEVKVRSTAGSLGr-----DVKTGIARVLRRSRS-IAGFVVKVdeNrEGLDIYLTDQT 208 Aeropyrum pernix
19173259 114 RYVIRNMQCPDCAKvEAKQFWNSLVQVRHRAGHRR------MFIYLEHLVLKNNVYGDTSNIKQR--K-EGLDFYYIERN 184 Encephalitozoon cun...
14521191 151 TVYIRQTVCPRCQK-FLAGYYEAILQVRVEDREFTkeereeITRLVQEKVDEIMKRDRMGFIQDTieKeEGIDFYMGSTS 229 Pyrococcus abyssi
18312784 121 TFEYVYDICNSCRE-MLSRREVAVLQIRGYPRGIEndvkkkIIFIIEQELYKLKDK-KIGFISDIkdLkNGIDIYTTNAN 198 Pyrobaculum aerophilum
14590835 155 TVYVRQTVCPRCQK-FLAGYYEAILQVRVEGREFTkeereeITKLVQEKVDEIMKRDRMGFIQDTieKeEGIDFYMGSTS 233 Pyrococcus horikoshii
1175492  139 EFYVNNTQCPDCARtYTPHIWKAVCQVRQKVLHKR------TFLYLEQIILKHKAHMNTVNIKET--K-DGIDFYFGQRA 209 fission yeast
15899136 128 SLEMERELCDSCFR-KKTRYYEAIVQLRSKGKIGVdd---kKRAFFESFFSTSIVD----NISDVieGrEGVDYYFMSKS 199 Sulfolobus solfatar...
13541309 113 PYSVTYISCPTCNK-ITGSYFEATIQLRTVSTKYDnil-esVLESIEAIVEKRKKEDAESFISKVekKpEGIDIYLGKRT 190 Thermoplasma volcanium
16082026 113 PYSVNYISCPTCNK-LTGSYFEATIQLRTVSTKYDeil-seVLDSIEKIMEKRRKMDASSFISKIerKpEGVDIYLGKKG 190 Thermoplasma acidop...
6321964  206 HAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPICKDDLVVLPKklaksmgniSQFVLCSKISNTVQF 285 baker's yeast
14600940 209 AARMLAGKLRSEFSAEVKESYKLVGRQ-PSGRRKGRLTISVRIPEYRPGELISVEG---------RPHLYLGRSGRGLVT 278 Aeropyrum pernix
19173259 185 AAVRMVSFLQSVLPVRVKVSERLISKDVHTSKCNYKFSHSVEIAPLCKDDLVVVGKdvrr-slgiGSLAIVQKIATGIVL 263 Encephalitozoon cun...
14521191 230 AARKLANAIREKYGGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVEDRHg--------RVYEVEDVSGKGMRL 301 Pyrococcus abyssi
18312784 199 LARHLAYVIHRQFPSVVTETAKVVGVK--DGRKIYHMTYSVRIATYKPGDVIVLKG----------EKMAVTSINNKYVV 266 Pyrobaculum aerophilum
14590835 234 AARKLANAIREKYGGTISEAYELVGMDRQTSREVYRTSVTVRLPKFRKGDVVEDRYg--------RVYEVEEVNGKGMRL 305 Pyrococcus horikoshii
1175492  210 HAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPICKDDLVCLPKtvakahgniAQLVVCTKVGPTIRF 289 fission yeast
15899136 200 VARKLVSMISSIVDVEVNESYQNEKMK--NGKREAKLVISLRI------------------------------------- 240 Sulfolobus solfatar...
13541309 191 DGDVVSSFVLDHFFSSIIVTKTLAGVK--DGKKFFRFTYSLRILDAKEGSLLSVNR---------KKYILTAIRNRHIDV 259 Thermoplasma volcanium
16082026 191 DGDLVSSFILDHYFATLIVSKSLAGVK--EGRKFFRFTYSLRILDAPEGAIVSVDK---------RKYILTAIRNRHIDV 259 Thermoplasma acidop...
6321964  286 MDPTTL-QTADLSPSVYWRAP--FNALADVTQLVEFIVLDVDSTgisrgNRVLADItvartsdlgvndQVYYVRSHLGG- 361 baker's yeast
14600940 279 IDLDTGrERVVDTSRTGVLAG--VKRYEPGARLRRMMLLSSSGD-----SMVFLDVdkg-------mqEVVDAPRGSVRp 344 Aeropyrum pernix
19173259 264 LDARLM-KSVKITGSFYWNNQdgLKVLMSSKDFTKYTVVMKCCRrraggAMDGYDLtvts-----dgsEFSEARFHLGN- 336 Encephalitozoon cun...
14521191 302 KNLETW-ESEHYDWKTIKREK--VDLADYEE--KKAMLVSKTPS-----EAQFMDM------------ETYETFEVKKPs 359 Pyrococcus abyssi
18312784 267 LHLSERgRYEQLSISELLRSE---VTFIGQH------------------------------------------------- 294 Pyrobaculum aerophilum
14590835 306 KNLETW-KSEHYDWKTIKRER--VDLANYEE--KKAMLVSKTPS-----EVQFMDM------------ETYETFEVKKPt 363 Pyrococcus horikoshii
1175492  290 LDPLTL-QTCDMLPSIYWRTP--FPALADIPELTEFIVADVDLLgptngKYALADVelik----ssdgSTHLTRTHLGG- 361 fission yeast
15899136     --------------------------------------------------------------------------------     Sulfolobus solfatar...
13541309 260 IDVETE-DKTRINRNTFFVND--GKIVTKEPQMRKFIVVSRQGN-----ESLLMDA------------QTFKMITVKG-- 317 Thermoplasma volcanium
16082026 260 IDVETE-ERGRINRNVFFSND--GKIVTKEPQVKNFIVISRTED-----ESQIMDS------------QTFKIITIKG-- 317 Thermoplasma acidop...
6321964  362 ---ICHAGDSVMGYFIANSNYNSDLFD 385 baker's yeast
14600940 345 fveSMEPGRVYEVFIHGGRIYVLRETG 371 Aeropyrum pernix
19173259 337 ----VEEDDEILGYDLRHLNLAVECED 359 Encephalitozoon cuniculi
14521191 360 --dELAEGEIYSIVKVKGRMYVKGRD- 383 Pyrococcus abyssi
18312784     ---------------------------     Pyrobaculum aerophilum
14590835 364 --dELKEGEVYTVVRVKGRMYVKEEVK 388 Pyrococcus horikoshii
1175492  362 ---ILNAGNTVLAYHLAVTNFNNEVYD 385 fission yeast
15899136     ---------------------------     Sulfolobus solfataricus
13541309 318 ----TPESDEVYLFTYKGKYFM----- 335 Thermoplasma volcanium
16082026 318 ----RAEGNEIRVFTYRGKYFI----- 335 Thermoplasma acidophilum
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