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SUPT20H SPT20 homolog, SAGA complex component [ Canis lupus familiaris (dog) ]

Gene ID: 477299, updated on 5-Mar-2024

Summary

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Official Symbol
SUPT20Hprovided by VGNC
Official Full Name
SPT20 homolog, SAGA complex componentprovided by VGNC
Primary source
VGNC:VGNC:59097
See related
Ensembl:ENSCAFG00845027530
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SUPT20H in Genome Data Viewer
Location:
chromosome: 25
Exon count:
30
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (3756852..3796789)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (3688667..3728598)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (3722917..3762860)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (3659884..3699722)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (3650940..3690848)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092277 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene exosome component 8 Neighboring gene stress-induced-phosphoprotein 1-like Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene uncharacterized LOC106557745

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPT20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    3756852..3796789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038434757.1 → XP_038290685.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  2. XM_038434758.1 → XP_038290686.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  3. XM_038434765.1 → XP_038290693.1  transcription factor SPT20 homolog isoform X7

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650
    Related
    ENSCAFP00845038796.1, ENSCAFT00845049447.1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  4. XM_038434760.1 → XP_038290688.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  5. XM_038434766.1 → XP_038290694.1  transcription factor SPT20 homolog isoform X8

    UniProtKB/TrEMBL
    A0A8C0NIZ6, A0A8I3PVJ1, A0A8I3Q2F4, A0A8P0P650
    Related
    ENSCAFP00845038717.1, ENSCAFT00845049340.1
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  6. XM_038434755.1 → XP_038290683.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  7. XM_038434763.1 → XP_038290691.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 204
    Spt20; Spt20 family

  8. XM_038434756.1 → XP_038290684.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  9. XM_038434754.1 → XP_038290682.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  10. XM_038434759.1 → XP_038290687.1  transcription factor SPT20 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  11. XM_038434762.1 → XP_038290690.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 204
    Spt20; Spt20 family

  12. XM_038434764.1 → XP_038290692.1  transcription factor SPT20 homolog isoform X6

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 203
    Spt20; Spt20 family

  13. XM_038434770.1 → XP_038290698.1  transcription factor SPT20 homolog isoform X11

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  14. XM_038434768.1 → XP_038290696.1  transcription factor SPT20 homolog isoform X9

    UniProtKB/TrEMBL
    A0A8C0NG89
    Related
    ENSCAFP00845038601.1, ENSCAFT00845049194.1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  15. XM_038434761.1 → XP_038290689.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8C0S2V6
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  16. XM_038434771.1 → XP_038290699.1  transcription factor SPT20 homolog isoform X12

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  17. XM_038434769.1 → XP_038290697.1  transcription factor SPT20 homolog isoform X10

    UniProtKB/TrEMBL
    A0A8C0NG89
    Related
    ENSCAFP00845038111.1, ENSCAFT00845048585.1
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

RNA

  1. XR_005301480.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    3659884..3699722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038509750.1 → XP_038365678.1  transcription factor SPT20 homolog isoform X1

  2. XM_038509751.1 → XP_038365679.1  transcription factor SPT20 homolog isoform X1

  3. XM_038509753.1 → XP_038365681.1  transcription factor SPT20 homolog isoform X3

  4. XM_038509748.1 → XP_038365676.1  transcription factor SPT20 homolog isoform X1

  5. XM_038509756.1 → XP_038365684.1  transcription factor SPT20 homolog isoform X5

  6. XM_038509749.1 → XP_038365677.1  transcription factor SPT20 homolog isoform X1

  7. XM_038509747.1 → XP_038365675.1  transcription factor SPT20 homolog isoform X1

  8. XM_038509758.1 → XP_038365686.1  transcription factor SPT20 homolog isoform X7

    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  9. XM_038509755.1 → XP_038365683.1  transcription factor SPT20 homolog isoform X5

  10. XM_038509757.1 → XP_038365685.1  transcription factor SPT20 homolog isoform X6

  11. XM_038509762.1 → XP_038365690.1  transcription factor SPT20 homolog isoform X11

    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  12. XM_038509759.1 → XP_038365687.1  transcription factor SPT20 homolog isoform X8

    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  13. XM_038509760.1 → XP_038365688.1  transcription factor SPT20 homolog isoform X9

  14. XM_038509754.1 → XP_038365682.1  transcription factor SPT20 homolog isoform X4

  15. XM_038509752.1 → XP_038365680.1  transcription factor SPT20 homolog isoform X2

  16. XM_038509763.1 → XP_038365691.1  transcription factor SPT20 homolog isoform X12

    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  17. XM_038509761.1 → XP_038365689.1  transcription factor SPT20 homolog isoform X10

RNA

  1. XR_005344482.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    3650940..3690848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038637446.1 → XP_038493374.1  transcription factor SPT20 homolog isoform X1

  2. XM_038637447.1 → XP_038493375.1  transcription factor SPT20 homolog isoform X1

  3. XM_038637449.1 → XP_038493377.1  transcription factor SPT20 homolog isoform X3

  4. XM_038637444.1 → XP_038493372.1  transcription factor SPT20 homolog isoform X1

  5. XM_038637452.1 → XP_038493380.1  transcription factor SPT20 homolog isoform X5

  6. XM_038637445.1 → XP_038493373.1  transcription factor SPT20 homolog isoform X1

  7. XM_038637443.1 → XP_038493371.1  transcription factor SPT20 homolog isoform X1

  8. XM_038637454.1 → XP_038493382.1  transcription factor SPT20 homolog isoform X7

    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  9. XM_038637451.1 → XP_038493379.1  transcription factor SPT20 homolog isoform X5

  10. XM_038637453.1 → XP_038493381.1  transcription factor SPT20 homolog isoform X6

  11. XM_038637458.1 → XP_038493386.1  transcription factor SPT20 homolog isoform X11

    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  12. XM_038637455.1 → XP_038493383.1  transcription factor SPT20 homolog isoform X8

    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  13. XM_038637456.1 → XP_038493384.1  transcription factor SPT20 homolog isoform X9

  14. XM_038637450.1 → XP_038493378.1  transcription factor SPT20 homolog isoform X4

  15. XM_038637448.1 → XP_038493376.1  transcription factor SPT20 homolog isoform X2

  16. XM_038637459.1 → XP_038493387.1  transcription factor SPT20 homolog isoform X12

    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  17. XM_038637457.1 → XP_038493385.1  transcription factor SPT20 homolog isoform X10

RNA

  1. XR_005412207.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    3722917..3762860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038573181.1 → XP_038429109.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1

  2. XM_038573182.1 → XP_038429110.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1

  3. XM_038573184.1 → XP_038429112.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C0S2F1

  4. XM_038573179.1 → XP_038429107.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1

  5. XM_038573187.1 → XP_038429115.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C0S2F1

  6. XM_038573180.1 → XP_038429108.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1

  7. XM_038573178.1 → XP_038429106.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1

  8. XM_038573189.1 → XP_038429117.1  transcription factor SPT20 homolog isoform X7

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650

  9. XM_038573186.1 → XP_038429114.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C0S2F1

  10. XM_038573188.1 → XP_038429116.1  transcription factor SPT20 homolog isoform X6

    UniProtKB/TrEMBL
    A0A8C0S2F1

  11. XM_038573193.1 → XP_038429121.1  transcription factor SPT20 homolog isoform X11

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650

  12. XM_038573190.1 → XP_038429118.1  transcription factor SPT20 homolog isoform X8

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650

  13. XM_038573191.1 → XP_038429119.1  transcription factor SPT20 homolog isoform X9

    UniProtKB/TrEMBL
    A0A8C0NG89

  14. XM_038573185.1 → XP_038429113.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8C0S2V6

  15. XM_038573183.1 → XP_038429111.1  transcription factor SPT20 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0S2F1

  16. XM_038573194.1 → XP_038429122.1  transcription factor SPT20 homolog isoform X12

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650

  17. XM_038573192.1 → XP_038429120.1  transcription factor SPT20 homolog isoform X10

    UniProtKB/TrEMBL
    A0A8C0NG89

RNA

  1. XR_005378313.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    3688667..3728598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014107353.3 → XP_013962828.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  2. XM_014107355.3 → XP_013962830.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  3. XM_014107359.3 → XP_013962834.1  transcription factor SPT20 homolog isoform X7

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  4. XM_014107357.3 → XP_013962832.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  5. XM_005635442.4 → XP_005635499.1  transcription factor SPT20 homolog isoform X8

    See identical proteins and their annotated locations for XP_005635499.1

    UniProtKB/TrEMBL
    A0A8C0NIZ6, A0A8I3PVJ1, A0A8I3Q2F4, A0A8P0P650
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  6. XM_038458383.1 → XP_038314311.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  7. XM_038458384.1 → XP_038314312.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 204
    Spt20; Spt20 family

  8. XM_022409600.2 → XP_022265308.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  9. XM_014107352.3 → XP_013962827.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  10. XM_014107356.3 → XP_013962831.1  transcription factor SPT20 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  11. XM_022409602.2 → XP_022265310.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 204
    Spt20; Spt20 family

  12. XM_038458385.1 → XP_038314313.1  transcription factor SPT20 homolog isoform X6

    UniProtKB/TrEMBL
    A0A8C0S2F1
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 203
    Spt20; Spt20 family

  13. XM_005635450.4 → XP_005635507.1  transcription factor SPT20 homolog isoform X11

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  14. XM_005635447.4 → XP_005635504.1  transcription factor SPT20 homolog isoform X9

    UniProtKB/TrEMBL
    A0A8C0NG89
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  15. XM_014107358.3 → XP_013962833.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8C0S2V6
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  16. XM_005635451.4 → XP_005635508.1  transcription factor SPT20 homolog isoform X12

    UniProtKB/TrEMBL
    A0A8I3PVJ1, A0A8P0P650
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  17. XM_843603.6 → XP_848696.1  transcription factor SPT20 homolog isoform X10

    UniProtKB/TrEMBL
    A0A8C0NG89
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

RNA

  1. XR_002618953.2 RNA Sequence

Nucleotide Protein
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