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MTHFSD methenyltetrahydrofolate synthetase domain containing [ Pan troglodytes (chimpanzee) ]

Gene ID: 454295, updated on 17-Aug-2024

Summary

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Official Symbol
MTHFSDprovided by VGNC
Official Full Name
methenyltetrahydrofolate synthetase domain containingprovided by VGNC
Primary source
VGNC:VGNC:13740
Locus tag
CK820_G0029471
See related
Ensembl:ENSPTRG00000008440
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See MTHFSD in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (84703101..84727198, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (84703004..84727103, complement)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101059267 Neighboring gene forkhead box F1 Neighboring gene forkhead box C2 Neighboring gene forkhead box L1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methenyltetrahydrofolate synthase domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    84703101..84727198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009431370.4 → XP_009429645.1  methenyltetrahydrofolate synthase domain-containing protein isoform X6

    Conserved Domains (3) summary
    cd12270
    Location:269 → 340
    RRM_MTHFSD; RNA recognition motif in vertebrate methenyltetrahydrofolate synthetase domain-containing proteins
    pfam15662
    Location:209 → 316
    SPATA3; Spermatogenesis-associated protein 3 family
    cl00360
    Location:10 → 169
    5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family

  2. XM_001156018.6 → XP_001156018.2  methenyltetrahydrofolate synthase domain-containing protein isoform X10

    UniProtKB/TrEMBL
    A0A2J8LF01, A0A6D2W6A1, H2QBN9
    Related
    ENSPTRP00000014392.5
    Conserved Domains (2) summary
    cd12270
    Location:307 → 378
    RRM_MTHFSD; RNA recognition motif in vertebrate methenyltetrahydrofolate synthetase domain-containing proteins
    cl00360
    Location:10 → 207
    5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family

  3. XM_009431361.4 → XP_009429636.1  methenyltetrahydrofolate synthase domain-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A2I3SDF9, A0A2J8LF08, A0A6D2Y1A5
    Related
    ENSPTRP00000075073.1
    Conserved Domains (2) summary
    COG0212
    Location:10 → 211
    FAU1; 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
    cd12270
    Location:307 → 378
    RRM_MTHFSD; RNA recognition motif in vertebrate methenyltetrahydrofolate synthetase domain-containing proteins

  4. XM_063797911.1 → XP_063653981.1  methenyltetrahydrofolate synthase domain-containing protein isoform X7

  5. XM_511153.7 → XP_511153.2  methenyltetrahydrofolate synthase domain-containing protein isoform X3

    See identical proteins and their annotated locations for XP_511153.2

    UniProtKB/TrEMBL
    A0A2J8LF13, A0A8I3B158, K7C3N7, K7DNF4
    Conserved Domains (2) summary
    COG0212
    Location:9 → 210
    FAU1; 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
    cd12270
    Location:306 → 377
    RRM_MTHFSD; RNA recognition motif in vertebrate methenyltetrahydrofolate synthetase domain-containing proteins

  6. XM_009431362.3 → XP_009429637.1  methenyltetrahydrofolate synthase domain-containing protein isoform X2

    See identical proteins and their annotated locations for XP_009429637.1

    UniProtKB/TrEMBL
    A0A2J8LF00, A0A8I3B1U6, K7DA55, K7DEM2
    Conserved Domains (2) summary
    cd12270
    Location:306 → 377
    RRM_MTHFSD; RNA recognition motif in vertebrate methenyltetrahydrofolate synthetase domain-containing proteins
    cl00360
    Location:9 → 206
    5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family

  7. XM_063797918.1 → XP_063653988.1  methenyltetrahydrofolate synthase domain-containing protein isoform X9

  8. XM_063797915.1 → XP_063653985.1  methenyltetrahydrofolate synthase domain-containing protein isoform X9

  9. XM_063797917.1 → XP_063653987.1  methenyltetrahydrofolate synthase domain-containing protein isoform X9

  10. XM_063797916.1 → XP_063653986.1  methenyltetrahydrofolate synthase domain-containing protein isoform X9

  11. XM_063797912.1 → XP_063653982.1  methenyltetrahydrofolate synthase domain-containing protein isoform X8

  12. XM_009431363.4 → XP_009429638.1  methenyltetrahydrofolate synthase domain-containing protein isoform X4

    See identical proteins and their annotated locations for XP_009429638.1

    Conserved Domains (3) summary
    cd12270
    Location:287 → 358
    RRM_MTHFSD; RNA recognition motif in vertebrate methenyltetrahydrofolate synthetase domain-containing proteins
    pfam15662
    Location:227 → 334
    SPATA3; Spermatogenesis-associated protein 3 family
    cl00360
    Location:10 → 187
    5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family

  13. XM_054668547.2 → XP_054524522.1  methenyltetrahydrofolate synthase domain-containing protein isoform X5

  14. XM_063797914.1 → XP_063653984.1  methenyltetrahydrofolate synthase domain-containing protein isoform X9

  15. XM_009431364.5 → XP_009429639.1  methenyltetrahydrofolate synthase domain-containing protein isoform X4

    See identical proteins and their annotated locations for XP_009429639.1

    Conserved Domains (3) summary
    cd12270
    Location:287 → 358
    RRM_MTHFSD; RNA recognition motif in vertebrate methenyltetrahydrofolate synthetase domain-containing proteins
    pfam15662
    Location:227 → 334
    SPATA3; Spermatogenesis-associated protein 3 family
    cl00360
    Location:10 → 187
    5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family

  16. XM_063797913.1 → XP_063653983.1  methenyltetrahydrofolate synthase domain-containing protein isoform X8

  17. XM_063797910.1 → XP_063653980.1  methenyltetrahydrofolate synthase domain-containing protein isoform X5

  18. XM_063797909.1 → XP_063653979.1  methenyltetrahydrofolate synthase domain-containing protein isoform X4

Nucleotide Protein
Heading Accession and Version

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