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kctd6b potassium channel tetramerization domain containing 6b [ Danio rerio (zebrafish) ]

Gene ID: 436601, updated on 2-Nov-2024

Summary

Official Symbol
kctd6bprovided by ZNC
Official Full Name
potassium channel tetramerization domain containing 6bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-14
See related
Ensembl:ENSDARG00000023703 AllianceGenome:ZFIN:ZDB-GENE-040718-14
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
kctd6; zgc:91884
Summary
Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD6 (potassium channel tetramerization domain containing 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See kctd6b in Genome Data Viewer
Location:
chromosome: 23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (19670113..19673769)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (19743770..19747426)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene filamin B, beta (actin binding protein 278) Neighboring gene abhydrolase domain containing 6, acylglycerol lipase b Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 5 Neighboring gene osteoglycin, paralog b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
BTB/POZ domain-containing protein KCTD6
Names
potassium channel tetramerisation domain containing 6
potassium channel tetramerisation domain containing 6b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002329.1NP_001002329.1  BTB/POZ domain-containing protein KCTD6

    See identical proteins and their annotated locations for NP_001002329.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076452
    UniProtKB/Swiss-Prot
    Q6DG99
    Related
    ENSDARP00000034172.5, ENSDART00000031872.6
    Conserved Domains (2) summary
    smart00225
    Location:14104
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cl02518
    Location:14102
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    19670113..19673769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395142.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    660..1763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395361.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    199743..203345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)