U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4345268 4-hydroxybenzoate polyprenyltransferase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345268, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4345268
Gene description
4-hydroxybenzoate polyprenyltransferase, mitochondrial
Locus tag
OSNPB_080322600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsPPT1
Expression
Ubiquitous expression in leaves after flowering (RPKM 5.5), flower buds (RPKM 5.3) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4345268 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14146268..14149823, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14078932..14082501, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360 Neighboring gene pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like Neighboring gene uncharacterized LOC4345269 Neighboring gene uncharacterized LOC136351332

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa. Ohara K, et al. Plant Cell Physiol, 2006 May. PMID 16501255
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
4-hydroxybenzoate polyprenyltransferase, mitochondrial
Names
Os08g0322600
P0048E12.27
p-hydroxybenzoate polyprenyltransferase
putative PGT-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    14146268..14149823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793105.3 → XP_015648591.1  4-hydroxybenzoate polyprenyltransferase, mitochondrial

    UniProtKB/TrEMBL
    B8B9Q6, Q0J6G2, Q6ZAH2
    Conserved Domains (1) summary
    PLN02809
    Location:130 → 418
    PLN02809; 4-hydroxybenzoate nonaprenyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials