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LOC4329922 uncharacterized LOC4329922 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329922, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329922
Gene description
uncharacterized LOC4329922
Locus tag
OSNPB_020606100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1058_F07.22
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Genomic context

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See LOC4329922 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24231697..24235786, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23749124..23753234, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene chitinase 6-like Neighboring gene uncharacterized LOC4329921 Neighboring gene B-box zinc finger protein 25 Neighboring gene tRNA (guanine(37)-N1)-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4329922
Names
Os02g0606100
eukaryotic translation initiation factor 2A
putative eukaryotic translation initiation factor 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    24231697..24235786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026022685.2 → XP_025878470.1  uncharacterized protein LOC4329922 isoform X2

    UniProtKB/TrEMBL
    Q6K8R0
    Conserved Domains (2) summary
    pfam08662
    Location:216 → 409
    eIF2A; Eukaryotic translation initiation factor eIF2A
    sd00039
    Location:278 → 314
    7WD40; WD40 repeat [structural motif]

  2. XM_015770975.3 → XP_015626461.1  uncharacterized protein LOC4329922 isoform X1

    UniProtKB/TrEMBL
    B8AF26, B9F0Z2, Q6K8R0
    Conserved Domains (3) summary
    COG5354
    Location:48 → 469
    COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
    sd00039
    Location:278 → 314
    7WD40; WD40 repeat [structural motif]
    pfam08662
    Location:216 → 409
    eIF2A; Eukaryotic translation initiation factor eIF2A
Nucleotide Protein
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