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WBP4 WW domain binding protein 4 [ Gallus gallus (chicken) ]

Gene ID: 418829, updated on 10-Oct-2024

Summary

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Symbol
WBP4provided by CGNC
Full Name
WW domain binding protein 4provided by CGNC
Primary source
CGNC:12723
See related
Ensembl:ENSGALG00010003113
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See WBP4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (165730339..165752925)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (165816368..165838942)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene SGT1 homolog, MIS12 kinetochore complex assembly cochaperone Neighboring gene E74 like ETS transcription factor 1 Neighboring gene mitochondrial translation release factor 1 Neighboring gene microRNA 2127 Neighboring gene N(alpha)-acetyltransferase 16, NatA auxiliary subunit Neighboring gene regulator of cell cycle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WW domain-binding protein 4
Names
WBP-4
WW domain binding protein 4 (formin binding protein 21)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030824.2 → NP_001025995.2  WW domain-binding protein 4

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000027
    UniProtKB/Swiss-Prot
    Q5F457
    UniProtKB/TrEMBL
    A0A8V0XJB5
    Related
    ENSGALP00010004362.1, ENSGALT00010007254.1
    Conserved Domains (2) summary
    COG5104
    Location:126 → 207
    PRP40; Splicing factor [RNA processing and modification]
    pfam06220
    Location:8 → 44
    zf-U1; U1 zinc finger

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    165730339..165752925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015275479.4 → XP_015130965.2  WW domain-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XFC1
    Related
    ENSGALP00010004359.1, ENSGALT00010007250.1
    Conserved Domains (1) summary
    COG5104
    Location:75 → 156
    PRP40; Splicing factor [RNA processing and modification]

  2. XM_015275483.4 → XP_015130969.2  WW domain-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XFC1
    Conserved Domains (1) summary
    COG5104
    Location:75 → 156
    PRP40; Splicing factor [RNA processing and modification]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    165816368..165838942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908215.1 → XP_046764171.1  WW domain-binding protein 4 isoform X1

  2. XM_046908214.1 → XP_046764170.1  WW domain-binding protein 4 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5F457.1 GenPept UniProtKB/Swiss-Prot:Q5F457

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials