4PJO,6N7X


Conserved Protein Domain Family
zf-U1

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pfam06220: zf-U1 
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U1 zinc finger
This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family.
Statistics
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PSSM-Id: 368798
Aligned: 11 rows
Threshold Bit Score: 53.5941
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4PJO_m     1 MPKFYCDYCDTYLTHDSPSVrKTHCSGRKHKENVKDYY 38  human
Q61048     8 QPKKFCDYCKCWIADNRPSV-EFHERGKNHKENVARRI 44  house mouse
P90815     1 MPKYYCDYCDTFLTHDSPSVrKTHNGGRKHKDNVRMFY 38  Caenorhabditis elegans
Q56XE4     1 MPRYYCDYCDTYLTHDSPSVrKQHNAGYKHKANVRIYY 38  thale cress
Q8IAW3     1 MPKYYCEYCDIYLTHSSPVGrRQHIHGRKHISAKIEYF 38  Plasmodium falciparum 3D7
O60138     8 IPKYYCKYCQIFV-KDTPFArRSHEQTYKHQDAIKKVM 44  Schizosaccharomyces pombe 972h-
6N7X_B     1 MTRYYCEYCHSYLTHDTLSVrKSHLVGKNHLRITADYY 38  Saccharomyces cerevisiae S288C
Q8IPW7     3 GKSYYCDYCCCFLKNDL-NVrKLHNGGIAHAIAKSNYL 39  fruit fly
Q8SR72     1 MPRYFCEFCNKMLLNDRLRSrRMHCGGAKHGLMRKAYY 38  Encephalitozoon cuniculi
Q9P794     1 MPRYLCDYCQVWLTHDSQSVrKAHNAGRAHIQNVQDYY 38  Schizosaccharomyces pombe 972h-
CAP72695   1 MPKFFCDYCDVYLTHDSMSVrKAHNSGRNHLRNVVDYY 38 
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