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znf410 zinc finger protein 410 [ Danio rerio (zebrafish) ]

Gene ID: 402951, updated on 2-Nov-2024

Summary

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Official Symbol
znf410provided by ZNC
Official Full Name
zinc finger protein 410provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1817
See related
Ensembl:ENSDARG00000008218 AllianceGenome:ZFIN:ZDB-GENE-040426-1817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77303
Summary
Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF410 (zinc finger protein 410). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See znf410 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (54349461..54360183)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (54559957..54570843)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene CLOCK-interacting pacemaker b Neighboring gene uncharacterized LOC137488710 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5b Neighboring gene leucine rich repeat and fibronectin type III domain containing 5b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC77303

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 410

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205653.1 → NP_991216.1  zinc finger protein 410

    See identical proteins and their annotated locations for NP_991216.1

    Status: PROVISIONAL

    Source sequence(s)
    BC065642
    UniProtKB/TrEMBL
    Q6P0F3
    Related
    ENSDARP00000120027.1, ENSDART00000147542.3
    Conserved Domains (2) summary
    sd00017
    Location:251 → 273
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:295 → 320
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    54349461..54360183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009295041.4 → XP_009293316.1  zinc finger protein 410 isoform X1

    UniProtKB/TrEMBL
    A0A8M3ALU5
    Conserved Domains (3) summary
    COG5048
    Location:215 → 399
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:251 → 273
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:295 → 320
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005170226.5 → XP_005170283.1  zinc finger protein 410 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BHJ7, E7F8R1
    Related
    ENSDARP00000123606.1, ENSDART00000132168.3
    Conserved Domains (2) summary
    sd00017
    Location:251 → 273
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:295 → 320
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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