U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ppp5c.S protein phosphatase 5, catalytic subunit S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398004, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ppp5c.S
Official Full Name
protein phosphatase 5, catalytic subunit S homeolog
Primary source
Xenbase:XB-GENE-982050
Locus tag
XELAEV_18042357mg
See related
EnsemblRapid:ENSXLAG00005009434 AllianceGenome:Xenbase:XB-GENE-982050
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pp5; ppp5c
Summary
Predicted to enable metal ion binding activity and myosin phosphatase activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human PPP5C (protein phosphatase 5 catalytic subunit). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ppp5c.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (79044430..79056840, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (76656881..76669291, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8-like Neighboring gene prostaglandin I2 receptor S homeolog Neighboring gene peptidoglycan recognition protein 1 S homeolog Neighboring gene F-box protein 46 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein phosphatase 5, catalytic subunit S homeolog
NP_001081698.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088229.1 → NP_001081698.1  protein phosphatase 5, catalytic subunit S homeolog

    See identical proteins and their annotated locations for NP_001081698.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073033
    UniProtKB/TrEMBL
    O42205, Q6GPS6
    Related
    ENSXLAP00005027550.1, ENSXLAT00005028282.1
    Conserved Domains (7) summary
    smart00156
    Location:198 → 474
    PP2Ac; Protein phosphatase 2A homologues, catalytic domain
    sd00006
    Location:22 → 50
    TPR; TPR repeat [structural motif]
    cd15830
    Location:20 → 147
    BamD; BamD lipoprotein, a component of the beta-barrel assembly machinery
    cd07417
    Location:170 → 485
    MPP_PP5_C; PP5, C-terminal metallophosphatase domain
    pfam00515
    Location:22 → 54
    TPR_1; Tetratricopeptide repeat
    pfam13371
    Location:65 → 128
    TPR_9; Tetratricopeptide repeat
    pfam13414
    Location:22 → 86
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    79044430..79056840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.