3TGO,3Q5M,2YHC,3QKY


Conserved Protein Domain Family
BamD

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cd15830: BamD 
Click on image for an interactive view with Cn3D
BamD lipoprotein, a component of the beta-barrel assembly machinery
BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.
Statistics
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PSSM-Id: 276939
Aligned: 33 rows
Threshold Bit Score: 164.733
Created: 13-Nov-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 42 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #       ### #                   ##  #  ##  #  ##                      #  #
3TGO_A        14 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPf--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPtHPNIDY 91  Escherichia col...
3QKY_A        13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRt--HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQiDPRVPQ 90  Rhodothermus ma...
O67310        31 GYAKEFYEKGLSEYRKGDYGDAKSNFEKALNYLEhltPEQIKKVKYLLVKSAYKDKDYVDAVVYAEDFLANYPgSKEAEE 110 Aquifex aeolicus
Q4FPL2        37 MQMSDAYKEGYFELQRGDVLLAAKKFNEAELLFPq--SPWAAKSAIMAAYAYYTQYYYSDAIFELERYLVTYPnHKDKVY 114 Candidatus Pela...
YP_004121580  32 DTAQELYEAGMDAMGNKEYGDAQQYFSKLKDRFPf--SPFALRAELALGDAYFLDADYLMALDSYKEFEALHPsHESIPY 109 Desulfovibrio a...
YP_002953544  35 DTAQELYEAGRQSMADKDYYGAINYFMKLKDRYPf--SPYTPMGTVALGDAYFLTEDYGMAAETYKEFESVHPrSEEIPY 112 Desulfovibrio m...
Q9JVB7        33 WSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPt--SRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLHPqHPNMDY 110 Neisseria menin...
Q87AR6        39 MPVEHLYDKAHTLMKKGNWAGAELSFKRLIAQYPy--GPYTEQAMVENAYAQYKSGKHDDAVSSIDRFIRTYPtHHNIPY 116 Xylella fastidiosa
Q98KC1        49 EPADVLYNQGLANLNAGRLDEASKKFDAVDRQHPy--SEWARKSMVMGAFADYRKGSYDEAISSAKRYLALYPsTDDAPY 126 Mesorhizobium loti
Q72B03        51 DTAQELYESGNDAMREKDYVAAAQAYTRLKDNYPf--SPYTIEAELSLADAYFLDEEYPAAAEAYKEFETLHPrHQAIPY 128 Desulfovibrio v...
Feature 1          #   #                          #  #       #     #  ## ###### #  #             
3TGO_A        92 VMYMRGLTNMALDDsalqgffgvdrsdRDPQHARAAFSDFSKLVRGYPNSQYtTDATKRLVFLKDRLAKYEYSVAEYYTE 171 Escherichia col...
3QKY_A        91 AEYERAMCYYKLSPpy----------eLDQTDTRKAIEAFQLFIDRYPNHELvDDATQKIRELRAKLARKQYEAARLYER 160 Rhodothermus ma...
O67310       111 VFYILVDSLVKVAPdp----------yRDQTYTVEAIRKAKEFLAKYPDSRFtRKVEEVIEEANKKLAYHEYYIAKFYEE 180 Aquifex aeolicus
Q4FPL2       115 AHFLLGMSFYEQIVde----------kKDLKSILDSKEQFETIIRDYPSTEFaMDAKFKIDLINEILAAKEMYIARYYLK 184 Candidatus Pela...
YP_004121580 110 VLYQIGSADFNLFRsi----------dRRQENIQEGLEYFYRLRETYPDSEYaTASEDMITKGRRILAEHEVYVADFFWR 179 Desulfovibrio a...
YP_002953544 113 VLYQVGVSNFKRSEsi----------dMPQSNLQEAIQYFYLLEQTFPDTEYgKEAADYIRRCKKRMAEHELFVADFYWR 182 Desulfovibrio m...
Q9JVB7       111 ALYLRGLVLFNEDQsflnklasqdwsdRDPKANREAYQAFAELVQRFPNSKYaADATARMVKLVDALGGNEMSVARYYMK 190 Neisseria menin...
Q87AR6       117 MYYLRGLSNSNRDTiflrkvwsldlsrRDLSAPQQAYNDFKTVLDRYPNSRYaTDAKKQMTELRNMFAQYEMNVTLYYLR 196 Xylella fastidiosa
Q98KC1       127 AQYIIGLSYYRQIKdv----------tQDQKEARQTLQTMQDLVTRWPTSEYvDDAKEKIRFANDQLAGKEMQIGRYYLE 196 Mesorhizobium loti
Q72B03       129 VLYQVGMARLKSFIsv----------dRPVNNVQEAYQYFQRLRESYPGTEYaAKAEEHMKECRRLLAERELFIADVYWR 198 Desulfovibrio v...
Feature 1                      # ###      #                              #  ##  ## 
3TGO_A       172 RGAWVAVVNRVEGMLRDYPdt-qaTRDALPLMENAYRQm----------qMNAQAEKVAKIIAANS 226 Escherichia coli K12
3QKY_A       161 RELYEAAAVTYEAVFDAYPdt-pwADDALVGAMRAYIAyaeqsvrarqpeRYRRAVELYERLLQIF 225 Rhodothermus marinus DSM 4252
O67310       181 YGYPYNAAIRYREVLINFP-----EYFSEERLAYKYIKn----------lLLTPKQVKREREKLED 231 Aquifex aeolicus
Q4FPL2       185 KTKWIPALNRFKTVVKDYNtt-iyTEEALHRLVEINYRl----------gLINESKKYASTLGYNY 239 Candidatus Pelagibacter ubiqu...
YP_004121580 180 TEQYGPAWNRYQYVVENFSdvpdlRDYARKRAEYSYFEy----------qKTLSEEERLRIQGSWK 235 Desulfovibrio aespoeensis Aspo-2
YP_002953544 183 TSQYGAAWKRYMYTVENYKdleevLEYAKLRAELSYLEy----------qKTLTENERQAIEGSWR 238 Desulfovibrio magneticus RS-1
Q9JVB7       191 RGAYIAAANRAQKIIGSYQnt-ryVEESLAILELAYQKl----------gKPQLAADTRRVLETNF 245 Neisseria meningitidis
Q87AR6       197 RTAWVAAAGRANFLLETYPqs-pfQYDAVAALGEAYTHl----------gNKTLADNARQVLQTNA 251 Xylella fastidiosa
Q98KC1       197 RREYIAAVKRFRTVVENYSnt-rhVEEALARLTESYYAm----------gLTSEAQTAAAVLGTNY 251 Mesorhizobium loti
Q72B03       199 TGKYGAAWQRYSFVRDNFKdvphaVEYATEKANVAYLRh-----------REAQSENIREAREGSW 253 Desulfovibrio vulgaris

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