FAT1 FAT atypical cadherin 1 [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: FAT1provided by CGNC
Official Full Name: FAT atypical cadherin 1provided by CGNC
Primary source: CGNC:10185
See related: Ensembl:ENSGALG00010013371
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: FAT
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 4

Exon count:: 32

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	4	NC_052535.1 (61214407..61315036, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	4	NC_052576.1 (61202131..61301411, complement)

Chromosome 4 - NC_052535.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Fat-1 transcripts were expressed in the mesenchyme adjacent to the wrist joint zone and in the interdigit mesenchyme in the chick embryo
Title: The expression of Fat-1 cadherin during chick limb development.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

MARC_21680-21681:1033477328:1 (e-PCR)
- UniSTS:268604

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: protocadherin Fat 1; LOW QUALITY PROTEIN: protocadherin Fat 1

Names: FAT tumor suppressor homolog 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

61214407..61315036 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015285559.4 → XP_015141045.2 protocadherin Fat 1 isoform X1

UniProtKB/TrEMBL

A0A8V0YDW1, A0A8V0YS26

Related

ENSGALP00010018997.1, ENSGALT00010032207.1

Conserved Domains (4) summary

cd11304
Location:3258 → 3355

Cadherin_repeat; Cadherin tandem repeat domain

smart00112
Location:278 → 357

CA; Cadherin repeats

smart00282
Location:3880 → 4011

LamG; Laminin G domain

cd00054
Location:4153 → 4189

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
XM_040699960.2 → XP_040555894.1 protocadherin Fat 1 isoform X1

UniProtKB/TrEMBL

A0A8V0YDW1, A0A8V0YS26

Conserved Domains (4) summary

cd11304
Location:3258 → 3355

Cadherin_repeat; Cadherin tandem repeat domain

smart00112
Location:278 → 357

CA; Cadherin repeats

smart00282
Location:3880 → 4011

LamG; Laminin G domain

cd00054
Location:4153 → 4189

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
XM_015285560.4 → XP_015141046.2 protocadherin Fat 1 isoform X1

UniProtKB/TrEMBL

A0A8V0YDW1, A0A8V0YS26

Related

ENSGALP00010018987.1, ENSGALT00010032197.1

Conserved Domains (4) summary

cd11304
Location:3258 → 3355

Cadherin_repeat; Cadherin tandem repeat domain

smart00112
Location:278 → 357

CA; Cadherin repeats

smart00282
Location:3880 → 4011

LamG; Laminin G domain

cd00054
Location:4153 → 4189

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
XM_040699959.2 → XP_040555893.1 protocadherin Fat 1 isoform X1

UniProtKB/TrEMBL

A0A8V0YDW1, A0A8V0YS26

Conserved Domains (4) summary

cd11304
Location:3258 → 3355

Cadherin_repeat; Cadherin tandem repeat domain

smart00112
Location:278 → 357

CA; Cadherin repeats

smart00282
Location:3880 → 4011

LamG; Laminin G domain

cd00054
Location:4153 → 4189

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

61202131..61301411 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040671310.2 → XP_040527244.1 LOW QUALITY PROTEIN: protocadherin Fat 1 isoform X2

UniProtKB/TrEMBL

A0A8V0YDW1

Conserved Domains (4) summary

cd11304
Location:3235 → 3332

Cadherin_repeat; Cadherin tandem repeat domain

smart00112
Location:278 → 357

CA; Cadherin repeats

smart00282
Location:3857 → 3988

LamG; Laminin G domain

cd00054
Location:4130 → 4166

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...