rpap3 RNA polymerase II associated protein 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rpap3provided by ZNC
Official Full Name: RNA polymerase II associated protein 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-928
See related: Ensembl:ENSDARG00000087962 AllianceGenome:ZFIN:ZDB-GENE-040426-928
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:56178
Summary: Is expressed in alar plate midbrain region; forerunner cell group; immature eye; and optic tectum. Orthologous to human RPAP3 (RNA polymerase II associated protein 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (966061..983242)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (952613..969794)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: RNA polymerase II-associated protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200204.2 → NP_956498.2 RNA polymerase II-associated protein 3

Status: VALIDATED

Source sequence(s)

FO904962

UniProtKB/TrEMBL

A0A8M1PAY5, F1R498

Related

ENSDARP00000107727.2, ENSDART00000122535.4

Conserved Domains (5) summary

sd00006
Location:128 → 156

TPR; TPR repeat [structural motif]

pfam00515
Location:196 → 229

TPR_1; Tetratricopeptide repeat

pfam13414
Location:278 → 344

TPR_11; TPR repeat

pfam13432
Location:172 → 230

TPR_16; Tetratricopeptide repeat

pfam13877
Location:475 → 566

RPAP3_C; Potential Monad-binding region of RPAP3