Conserved Protein Domain Family
RPAP3_C

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pfam13877: RPAP3_C (this model, PSSM-Id:290588 is obsolete and has been replaced by 464012)
Potential Monad-binding region of RPAP3
This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.
Statistics
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PSSM-Id: 290588
Aligned: 151 rows
Threshold Bit Score: 40.2281
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9D706        540 VPANSFQLESDFRQL-RSSP---------EMLYq--------YVKnIEPSLYPKLF-Q-KNLDPDVFNQIIK-------- 591  house mouse
A0CMR4        113 QCKNFRDFRTLFSKYyIKPL---------TQENyael--mniLQM-QSEDNIKKIF-S-IDFHVEYFFKILE-------- 170  Paramecium te...
Q5CFZ4        296 NCNNSIEFLRIWQNIyRNDQ---------FIDYy-------lFFS-HIFTNLDKIY-NkTEMEVNILEKILErisvilde 357  Cryptosporidi...
Q6CDD4        214 ACLNAYTLAQLLKSPqNQMK---------EVRTy--------LYN-YDVAQWPHIF-GrGGIDADFIEEMLK-------- 266  Yarrowia lipo...
XP_001025235  733 lPENSTVFEKDFNQL-KNNR---------DKFYa--------YIKqIPGDHYAKIYdK-NDIPSNILLAIVQ-------- 785  Tetrahymena t...
CCD80542      660 PITNSYEFQNYWINI-QHLK---------RLNYinamneiiiLLHnILPEQLPKLI-G-IRMEAEMLDDLLN-------- 719  Schistosoma m...
XP_001026431  694 qeiNSTKFMNEWNHI-KSDK---------HTSFk--------YLMqVDSSQLVNAF-K-EGLELHTLKEIFE-------- 745  Tetrahymena t...
GAA55663      130 ePITPQKFYSHWHTI-RRKKhssdkehlhDLAEf--------LLSq-DSLLHRALF-D-SGLGVSMLSEFLA-------- 189  Clonorchis si...
CDS23106       10 rfnkidDFIRCWGDL-EGHQ---------SERAla------dLLMeQSRELLQEVF-A-SSAGLPILPRVLK-------- 63   Echinococcus ...
XP_001018525  127 QANSFRDFKKNFDSQyKFPI---------DDVAaqni--yliFKS-QKEENFKKIF-S-LDFDVSYFIKIIK-------- 184  Tetrahymena t...
Q9D706        592 ILHDFY-IEREkpa-----------liFEVLERLSQLRRFDMAV-MFMSGPER 631  house mouse
A0CMR4        171 VFDYSI-STLKdgke--------lsfiVGFLDELVKIKDFMQQIkKFLKKSEK 214  Paramecium tetraurelia
Q5CFZ4        358 LLKNAF-QSKPkekl--------vshiFKIIQNLGKTKRFDFVV-LMLNEnfq 400  Cryptosporidium hominis
Q6CDD4        267 AIIENE-DNSQr--------------pRDIVQSMKKCERFNIAN-TFVPKDLK 303  Yarrowia lipolytica
XP_001025235  786 VLQECG-I-GDnke-----------mcQNIVRGLTKTSKFNLCV-KFLTKKEK 824  Tetrahymena thermophila SB210
CCD80542      720 AINVSMnTENNnsl-----------wiYDILIQLSKTARFDCAL-FLISDDTK 760  Schistosoma mansoni
XP_001026431  746 TLNSQY-SLNDnk------------tiKDYITQIPNLKRFKLSI-GLFTANDK 784  Tetrahymena thermophila SB210
GAA55663      190 VLEYAS-QLDTmqlssvnsrteilsgiVSALNAFSASDQFPIAV-DFLSEDEK 240  Clonorchis sinensis
CDS23106       64 CLLTA---SSEdpq-----------rvINTLQAISSSENFELVA-LFLSDEEK 101  Echinococcus granulosus
XP_001018525  185 VMKYVI-QESLvpnqna----lellflMEFLDQMSKVKDFQFSVpKFLSSKEK 232  Tetrahymena thermophila SB210
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