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cgd6_2180 Fun12p GTpase; translation initiation factor IF2 [ Cryptosporidium parvum Iowa II ]

Gene ID: 3375881, updated on 17-May-2024

Summary

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Gene symbol
cgd6_2180
Gene description
Fun12p GTpase; translation initiation factor IF2
Locus tag
cgd6_2180
See related
ApiDB_CryptoDB:cgd6_2180; CryptoDB:cgd6_2180; VEuPathDB:cgd6_2180
Gene type
protein coding
RNA name
Fun12p GTpase; translation initiation factor IF2
RefSeq status
PROVISIONAL
Organism
Cryptosporidium parvum Iowa II (isolate: Iowa type II)
Lineage
Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_006985.1 (518438..521128)

Chromosome 6 - NC_006985.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene 60S ribosomal protein L11 Neighboring gene TBC domain containing protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006985.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Abrahamsen MS, et al. Science, 2004 Apr 16. PMID 15044751
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Fun12p GTpase; translation initiation factor IF2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006985.1 Reference assembly

    Range
    518438..521128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_627576.1 → XP_627576.1  Fun12p GTpase; translation initiation factor IF2 [Cryptosporidium parvum Iowa II]

    See identical proteins and their annotated locations for XP_627576.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7S7LEW3, Q5CX78
    Conserved Domains (5) summary
    cd01887
    Location:304 → 515
    IF2_eIF5B; Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family
    PRK04004
    Location:302 → 882
    PRK04004; translation initiation factor IF-2; Validated
    pfam11987
    Location:644 → 743
    IF-2; Translation-initiation factor 2
    cd03703
    Location:527 → 640
    aeIF5B_II; Domain II of archaeal and eukaryotic Initiation Factor 5
    cd16266
    Location:768 → 862
    IF2_aeIF5B_IV; Domain IV of prokaryotic Initiation Factor 2 and archaeal and eukaryotic Initiation Factor 5
Nucleotide Protein
Heading Accession and Version

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