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zgc:66484 zgc:66484 [ Danio rerio (zebrafish) ]

Gene ID: 327557, updated on 10-Sep-2024

Summary

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Official Symbol
zgc:66484provided by ZNC
Official Full Name
zgc:66484provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5768
See related
Ensembl:ENSDARG00000030478 AllianceGenome:ZFIN:ZDB-GENE-030131-5768
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi17d03; wu:fi17d03
Summary
Predicted to enable polyamine oxidase activity. Is expressed in gut; intestinal bulb; and pharynx. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (44899419..44905875, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (45098467..45108068, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene frizzled related protein Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 10 Neighboring gene villin 1 Neighboring gene integrin, beta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables polyamine oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC327557

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199827.1 → NP_956121.1  uncharacterized protein LOC327557

    See identical proteins and their annotated locations for NP_956121.1

    Status: PREDICTED

    Source sequence(s)
    BC055676
    UniProtKB/TrEMBL
    Q7SXB2
    Related
    ENSDARP00000115345.1, ENSDART00000138316.2
    Conserved Domains (1) summary
    PLN02568
    Location:50 → 404
    PLN02568; polyamine oxidase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    44899419..44905875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167917.4 → XP_005167974.1  uncharacterized protein LOC327557 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BG04
    Conserved Domains (2) summary
    PLN02568
    Location:37 → 522
    PLN02568; polyamine oxidase
    pfam13450
    Location:41 → 101
    NAD_binding_8; NAD(P)-binding Rossmann-like domain

  2. XM_005167919.4 → XP_005167976.1  uncharacterized protein LOC327557 isoform X2

    UniProtKB/TrEMBL
    A0A286YAP2, A0A8M2BFC4, F1Q7C3
    Conserved Domains (2) summary
    PLN02568
    Location:8 → 493
    PLN02568; polyamine oxidase
    pfam13450
    Location:12 → 72
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
Nucleotide Protein Strain
Heading Accession and Version

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