U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

krcp kelch repeat-containing protein [ Danio rerio (zebrafish) ]

Gene ID: 323406, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
krcpprovided by ZNC
Official Full Name
kelch repeat-containing proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2126
See related
Ensembl:ENSDARG00000040224 AllianceGenome:ZFIN:ZDB-GENE-030131-2126
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb97e08; wu:fi38d02; zgc:123032
Summary
Is expressed in several structures, including gut epithelium; hematopoietic system; nervous system; posterior lateral mesoderm; and tail bud. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (24881660..24888634)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (24610493..24617477)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885004 Neighboring gene adenosine deaminase domain containing 2 Neighboring gene MAP/microtubule affinity-regulating kinase 2b Neighboring gene REST corepressor 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RNA-seq of the aging brain in the short-lived fish N. furzeri - conserved pathways and novel genes associated with neurogenesis. Baumgart M, et al. Aging Cell, 2014 Dec. PMID 25059688, Free PMC Article
  2. Combinatorial regulation of novel erythroid gene expression in zebrafish. Galloway JL, et al. Exp Hematol, 2008 Apr. PMID 18243489, Free PMC Article
  3. Loss of gata1 but not gata2 converts erythropoiesis to myelopoiesis in zebrafish embryos. Galloway JL, et al. Dev Cell, 2005 Jan. PMID 15621534
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC123032

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
kelch repeat-containing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012366.1 → NP_001012366.1  kelch repeat-containing protein

    Status: PROVISIONAL

    Source sequence(s)
    AY835383
    UniProtKB/TrEMBL
    Q5I9I6
    Related
    ENSDARP00000058842.5, ENSDART00000058843.7
    Conserved Domains (5) summary
    smart00612
    Location:445 → 487
    Kelch; Kelch domain
    sd00038
    Location:323 → 369
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:377 → 410
    Kelch_1; Kelch motif
    pfam13415
    Location:227 → 279
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:270 → 315
    Kelch_4; Galactose oxidase, central domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    24881660..24888634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172254.4 → XP_005172311.1  kelch repeat-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8M2BJM3
    Conserved Domains (5) summary
    smart00612
    Location:446 → 488
    Kelch; Kelch domain
    sd00038
    Location:324 → 370
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:378 → 411
    Kelch_1; Kelch motif
    pfam13415
    Location:228 → 280
    Kelch_3; Galactose oxidase, central domain
    pfam13418
    Location:271 → 316
    Kelch_4; Galactose oxidase, central domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools