sdad1 SDA1 domain containing 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sdad1provided by ZNC
Official Full Name: SDA1 domain containing 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-021213-1
See related: Ensembl:ENSDARG00000105117 AllianceGenome:ZFIN:ZDB-GENE-021213-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa94e12; flj10498; chunp6864; wu:fa94e12
Summary: Predicted to be involved in ribosomal large subunit biogenesis and ribosomal large subunit export from nucleus. Predicted to act upstream of or within protein transport and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in ovary. Orthologous to human SDAD1 (SDA1 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (9366978..9384353, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (9274245..9291620, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info
involved_in ribosomal large subunit biogenesis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within ribosomal large subunit biogenesis	IEA Inferred from Electronic Annotation more info
involved_in ribosomal large subunit export from nucleus	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within ribosomal large subunit export from nucleus	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleolus	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein SDA1 homolog

Names: SDA1 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_173230.1 → NP_775337.1 protein SDA1 homolog

Status: PROVISIONAL

Source sequence(s)

AF506206

UniProtKB/Swiss-Prot

Q6NV26, Q8JHJ0

Related

ENSDARP00000142023.1, ENSDART00000169275.2

Conserved Domains (2) summary

pfam05285
Location:409 → 680

SDA1; SDA1

pfam08158
Location:62 → 111

NUC130_3NT; NUC130/3NT domain