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lama2 laminin, alpha 2 [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122784516, updated on 22-Mar-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
Locus tag
JOB18_000998
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
73
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG17 NC_058037.1 (17544575..17727390)

Linkage Group LG17 - NC_058037.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene uncharacterized LOC122783803 Neighboring gene kinesin-like protein KIF24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058037.1 Chromosome LG17 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058037.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    17544575..17727390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044049818.1 → XP_043905753.1  laminin subunit alpha-2

    Conserved Domains (10) summary
    smart00136
    Location:20 → 268
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:1039 → 1083
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1300 → 1429
    LamB; Laminin B domain
    smart00282
    Location:2463 → 2605
    LamG; Laminin G domain
    PRK04863
    Location:1797 → 2096
    mukB; chromosome partition protein MukB
    cd00055
    Location:898 → 946
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3304 → 3455
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1669 → 1922
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2296 → 2466
    Laminin_II; Laminin Domain II
    cl02548
    Location:558 → 691
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
Heading Accession and Version

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