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lama2 laminin, alpha 2 [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122539880, updated on 22-Mar-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
64
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 3 NC_057712.1 (65658975..66038407, complement)

Chromosome 3 - NC_057712.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene transmembrane protein 244 Neighboring gene 5S ribosomal RNA Neighboring gene Rho GTPase activating protein 18 Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene thymocyte selection associated

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057712.1 Chromosome 3 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057712.1 Reference ASM401019v2 Primary Assembly

    Range
    65658975..66038407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043675023.1 → XP_043530958.1  laminin subunit alpha-2

    Conserved Domains (10) summary
    smart00136
    Location:22 → 273
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:947 → 991
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1208 → 1339
    LamB; Laminin B domain
    smart00282
    Location:2128 → 2270
    LamG; Laminin G domain
    cd00055
    Location:897 → 943
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2899 → 3051
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02169
    Location:1685 → 2042
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam06008
    Location:1576 → 1811
    Laminin_I; Laminin Domain I
    pfam06009
    Location:1998 → 2132
    Laminin_II; Laminin Domain II
    cl02548
    Location:565 → 690
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
Heading Accession and Version

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