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lama2 laminin, alpha 2 [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122324748, updated on 8-May-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
See related
EnsemblRapid:ENSPRZG00000016042
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
65
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 20 NC_056718.1 (460300..604306)

Chromosome 20 - NC_056718.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene vesicular inhibitory amino acid transporter Neighboring gene enoyl-[acyl-carrier-protein] reductase, mitochondrial Neighboring gene Rho GTPase activating protein 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056718.1 Chromosome 20 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056718.1 Reference ASM1883169v1 Primary Assembly

    Range
    460300..604306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043219394.1 → XP_043075329.1  LOW QUALITY PROTEIN: laminin subunit alpha-2

    Related
    ENSPRZP00000029357.1, ENSPRZT00000035451.1
    Conserved Domains (10) summary
    smart00136
    Location:20 → 270
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1211 → 1339
    LamB; Laminin B domain
    smart00282
    Location:2144 → 2286
    LamG; Laminin G domain
    COG1196
    Location:1746 → 2110
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:996 → 1041
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2952 → 3104
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1571 → 1826
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2012 → 2147
    Laminin_II; Laminin Domain II
    cl02548
    Location:565 → 692
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
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