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LOC121569181 laminin subunit alpha-1-like [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121569181, updated on 28-May-2024

Summary

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Gene symbol
LOC121569181
Gene description
laminin subunit alpha-1-like
See related
EnsemblRapid:ENSCCFG00005031412
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
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Genomic context

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See LOC121569181 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
57
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 7 NC_059198.1 (40652249..40715986, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 7 NC_055073.1 (23994389..24060643, complement)

Chromosome 7 - NC_059198.1Genomic Context describing neighboring genes Neighboring gene lethal(3)malignant brain tumor-like protein 4 Neighboring gene rho GTPase-activating protein 28 Neighboring gene small nucleolar RNA SNORA29 Neighboring gene leucine-rich repeat-containing protein 30-like Neighboring gene protein tyrosine phosphatase receptor type Ma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059198.1 Reference ASM2061545v1 Primary Assembly

    Range
    40652249..40715986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041879909.1 → XP_041735843.1  laminin subunit alpha-1-like isoform X2

    Conserved Domains (9) summary
    smart00136
    Location:18 → 269
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:949 → 993
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2144 → 2281
    LamG; Laminin G domain
    COG1196
    Location:1782 → 2121
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:899 → 947
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2308 → 2464
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1573 → 1823
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2014 → 2146
    Laminin_II; Laminin Domain II
    cl02548
    Location:1210 → 1340
    Laminin_B; Laminin B (Domain IV)

  2. XM_041879908.1 → XP_041735842.1  laminin subunit alpha-1-like isoform X1

    Related
    ENSCCFP00005077906.1, ENSCCFT00005083897.1
    Conserved Domains (9) summary
    smart00136
    Location:18 → 269
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:949 → 993
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2145 → 2282
    LamG; Laminin G domain
    COG1196
    Location:1782 → 2122
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:899 → 947
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2309 → 2465
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1573 → 1823
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2015 → 2147
    Laminin_II; Laminin Domain II
    cl02548
    Location:1210 → 1340
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
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