U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC121313540 laminin subunit alpha-1-like [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121313540, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC121313540
Gene description
laminin subunit alpha-1-like
See related
EnsemblRapid:ENSPAHG00005007165
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
63
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 3 NC_054536.1 (85006811..85074065)

Chromosome 3 - NC_054536.1Genomic Context describing neighboring genes Neighboring gene receptor-type tyrosine-protein phosphatase mu-like Neighboring gene leucine-rich repeat-containing protein 30-like Neighboring gene Rho GTPase activating protein 28 Neighboring gene lethal(3)malignant brain tumor-like protein 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_054536.1 Chromosome 3 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054536.1 Reference ASM1765450v1 Primary Assembly

    Range
    85006811..85074065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041246212.1 → XP_041102146.1  laminin subunit alpha-1-like

    Related
    ENSPAHP00005010531.1, ENSPAHT00005011083.1
    Conserved Domains (8) summary
    smart00136
    Location:18 → 269
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:952 → 996
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2148 → 2287
    LamG; Laminin G domain
    cd00055
    Location:903 → 950
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2314 → 2470
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1576 → 1828
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2018 → 2152
    Laminin_II; Laminin Domain II
    cl02548
    Location:1216 → 1346
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.