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LAMA2 laminin subunit alpha 2 [ Rana temporaria (common frog) ]

Gene ID: 120937306, updated on 21-Mar-2024

Summary

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Gene symbol
LAMA2
Gene description
laminin subunit alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Rana temporaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana
Orthologs
human mouse all
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Genomic context

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See LAMA2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
64
Annotation release Status Assembly Chr Location
100 current aRanTem1.1 (GCF_905171775.1) 4 NC_053492.1 (287305090..288334923)

Chromosome 4 - NC_053492.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene small nucleolar RNA SNORA26 Neighboring gene uncharacterized LOC120935389 Neighboring gene 40S ribosomal protein SA-like Neighboring gene enoyl-[acyl-carrier-protein] reductase, mitochondrial-like Neighboring gene Rho GTPase activating protein 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053492.1 Chromosome 4 Reference aRanTem1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rana temporaria Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRanTem1.1

Genomic

  1. NC_053492.1 Reference aRanTem1.1

    Range
    287305090..288334923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040350410.1 → XP_040206344.1  LOW QUALITY PROTEIN: laminin subunit alpha-2

    Conserved Domains (10) summary
    smart00136
    Location:30 → 280
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:965 → 1009
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:1226 → 1356
    LamB; Laminin B domain
    smart00282
    Location:2159 → 2301
    LamG; Laminin G domain
    COG1196
    Location:1766 → 2124
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:915 → 963
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2777 → 2926
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1585 → 1844
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2029 → 2163
    Laminin_II; Laminin Domain II
    cl02548
    Location:579 → 707
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
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