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EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 [ Oryx dammah (scimitar-horned oryx) ]

Gene ID: 120880463, updated on 21-Mar-2024

Summary

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Gene symbol
EDEM3
Gene description
ER degradation enhancing alpha-mannosidase like protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryx dammah
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
Orthologs
human mouse all
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Genomic context

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See EDEM3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070205.1 (15137346..15205563)

NW_024070205.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S4, X isoform-like Neighboring gene U6 spliceosomal RNA Neighboring gene niban apoptosis regulator 1 Neighboring gene serine/threonine-protein kinase PLK1-like Neighboring gene chromosome unknown C1orf21 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024070205 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SCBI_Odam_1.1 Primary Assembly

Genomic

  1. NW_024070205.1 Reference SCBI_Odam_1.1 Primary Assembly

    Range
    15137346..15205563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040263808.1 → XP_040119742.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1

    Conserved Domains (3) summary
    cd02126
    Location:666 → 791
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    NF012181
    Location:813 → 924
    MSCRAMM_SdrD; MSCRAMM family adhesin SdrD
    cl04955
    Location:55 → 499
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  2. XM_040263810.1 → XP_040119744.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X3

    Conserved Domains (3) summary
    cd02126
    Location:666 → 791
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    NF000535
    Location:792 → 913
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cl04955
    Location:55 → 499
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  3. XM_040263809.1 → XP_040119743.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X2

    Conserved Domains (3) summary
    cd02126
    Location:665 → 790
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    NF012181
    Location:812 → 923
    MSCRAMM_SdrD; MSCRAMM family adhesin SdrD
    cl04955
    Location:55 → 499
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  4. XM_040263811.1 → XP_040119745.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X4

    Conserved Domains (3) summary
    cd02126
    Location:665 → 790
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    NF000535
    Location:791 → 912
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cl04955
    Location:55 → 499
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins
Nucleotide Protein
Heading Accession and Version

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