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Conserved domains on  [gi|2009550900|ref|XP_040119744|]
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ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X3 [Oryx dammah]

Protein Classification

glycoside hydrolase family 47 protein( domain architecture ID 10479226)

glycoside hydrolase family 47 protein such as ER class I alpha1,2-mannosidase, which is a critical enzyme in the maturation of N-linked oligosaccharides and ER-associated degradation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_hydro_47 pfam01532
Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyze the ...
 60-499 6.18e-154

Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).


:

Pssm-ID: 460241  Cd Length: 453  Bit Score: 460.87  E-value: 6.18e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  60 MFDHAYGNYMEHAYPADELMPLTCRGRvrgqepsrgdvdDALGKFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRDVNLDN 139
Cdd:pfam01532   1 AFLHAWDGYKKYAWGHDELRPISGGGN------------DTFGGWGATIVDSLDTLIIMGLTDEFEEAVDWVEKTLDFDK 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 140 DV-VVSVFETNIRVlggllgghsLAIMLkekGEYM--QWYNDELLQMAKQLGYKLLPAFNTTSGLPYPRINLKFGIRKPE 216
Cdd:pfam01532  69 DStEVSVFETTIRY---------LGGLL---SAYDlsGDGDDVLLEKAVDLADRLLPAFDTPTGIPYPRVNLKTGKGGNG 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 217 ARTGTetDTCTACAGTLILEFAALSRFTGATIFEEYARKALDFLWEKRQRSS--NLVGVTINIHTGDWVRKDSGVGAGID 294
Cdd:pfam01532 137 HVAGG--ASSLAEAGTLQLEFTRLSQLTGDPKYEDLAQKIMDVLWKNQSRTPlpGLVPIYIDPDTGKFVGSNIGLGARGD 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 295 SYYEYLLKAYVLLG--DDSFLERFNTHYDAIMRYI----SQPPLLLDVHIHKPMLNAR--TWMDALLAFFPGLQVL---- 362
Cdd:pfam01532 215 SYYEYLLKQYLLTGgtDPEYRDMYEEAMDAIKKHLlfrpSTPSDLLFIGELDSGGGGKlsPKMDHLSCFAGGMLALgatl 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 363 ----KGDIRPAIETHEMLYQVIK--KHNFLPEAF--------------TTDFRVHW--AQHPLRPEFAESTYFLYKATGD 420
Cdd:pfam01532 295 glprEGDLELAEKLTEGCYKTYDstPTGLGPEIFyfdpcdedcpwdedKWDFYVKIedPHYLLRPETIESLFYLYRATGD 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 421 PYYLEVGKTLIENLNKYARVPCGFAAMKDVR--TGSHEDRMDSFFLAEMFKYLYLLFADKEDIifDIEDYIFTTEAHLLP 498
Cdd:pfam01532 375 PKYREWGWEIFQAIEKYTRTECGYSGLQDVTspPGEKEDNMESFWLAETLKYLYLLFSDDDLL--SLDEWVFNTEAHPLP 452


                  .
gi 2009550900 499 L 499
Cdd:pfam01532 453 V 453
PA_EDEM3_like cd02126
PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This ...
 666-791 1.75e-77

PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


:

Pssm-ID: 239041 [Multi-domain]  Cd Length: 126  Bit Score: 248.04  E-value: 1.75e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 666 TAGPAQFGPDLSKHKETRGFVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSD 745
Cdd:cd02126     1 TAGPAQFGMDLTGDKAGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2009550900 746 TAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAVREYEEVEVLL 791
Cdd:cd02126    81 TAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126
MSCRAMM_ClfA super family cl41352
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 792-900 1.54e-05

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


The actual alignment was detected with superfamily member NF033609:

Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 49.14  E-value: 1.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 792 SDKAKDRDPEMENEEQPSSENDSQSAEQIASRSQEIDLVDQESPEESSVNSHPESLSPVDTDSaASVSSSEQDSNPVENL 871
Cdd:NF033609  704 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDS 782

                          90       100
                  ....*....|....*....|....*....
gi 2009550900 872 ETTSLDGECTDLDNQLQEQSETEEDSNPN 900
Cdd:NF033609  783 DSDSDSDSDSDSDSDSDSDSDSDSDSDSD 811
 
Name Accession Description Interval E-value
Glyco_hydro_47 pfam01532
Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyze the ...
 60-499 6.18e-154

Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).


Pssm-ID: 460241  Cd Length: 453  Bit Score: 460.87  E-value: 6.18e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  60 MFDHAYGNYMEHAYPADELMPLTCRGRvrgqepsrgdvdDALGKFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRDVNLDN 139
Cdd:pfam01532   1 AFLHAWDGYKKYAWGHDELRPISGGGN------------DTFGGWGATIVDSLDTLIIMGLTDEFEEAVDWVEKTLDFDK 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 140 DV-VVSVFETNIRVlggllgghsLAIMLkekGEYM--QWYNDELLQMAKQLGYKLLPAFNTTSGLPYPRINLKFGIRKPE 216
Cdd:pfam01532  69 DStEVSVFETTIRY---------LGGLL---SAYDlsGDGDDVLLEKAVDLADRLLPAFDTPTGIPYPRVNLKTGKGGNG 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 217 ARTGTetDTCTACAGTLILEFAALSRFTGATIFEEYARKALDFLWEKRQRSS--NLVGVTINIHTGDWVRKDSGVGAGID 294
Cdd:pfam01532 137 HVAGG--ASSLAEAGTLQLEFTRLSQLTGDPKYEDLAQKIMDVLWKNQSRTPlpGLVPIYIDPDTGKFVGSNIGLGARGD 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 295 SYYEYLLKAYVLLG--DDSFLERFNTHYDAIMRYI----SQPPLLLDVHIHKPMLNAR--TWMDALLAFFPGLQVL---- 362
Cdd:pfam01532 215 SYYEYLLKQYLLTGgtDPEYRDMYEEAMDAIKKHLlfrpSTPSDLLFIGELDSGGGGKlsPKMDHLSCFAGGMLALgatl 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 363 ----KGDIRPAIETHEMLYQVIK--KHNFLPEAF--------------TTDFRVHW--AQHPLRPEFAESTYFLYKATGD 420
Cdd:pfam01532 295 glprEGDLELAEKLTEGCYKTYDstPTGLGPEIFyfdpcdedcpwdedKWDFYVKIedPHYLLRPETIESLFYLYRATGD 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 421 PYYLEVGKTLIENLNKYARVPCGFAAMKDVR--TGSHEDRMDSFFLAEMFKYLYLLFADKEDIifDIEDYIFTTEAHLLP 498
Cdd:pfam01532 375 PKYREWGWEIFQAIEKYTRTECGYSGLQDVTspPGEKEDNMESFWLAETLKYLYLLFSDDDLL--SLDEWVFNTEAHPLP 452


                  .
gi 2009550900 499 L 499
Cdd:pfam01532 453 V 453
PA_EDEM3_like cd02126
PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This ...
 666-791 1.75e-77

PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239041 [Multi-domain]  Cd Length: 126  Bit Score: 248.04  E-value: 1.75e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 666 TAGPAQFGPDLSKHKETRGFVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSD 745
Cdd:cd02126     1 TAGPAQFGMDLTGDKAGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2009550900 746 TAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAVREYEEVEVLL 791
Cdd:cd02126    81 TAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126
PTZ00470 PTZ00470
glycoside hydrolase family 47 protein; Provisional
 55-499 3.77e-77

glycoside hydrolase family 47 protein; Provisional


Pssm-ID: 240427  Cd Length: 522  Bit Score: 261.20  E-value: 3.77e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  55 NQVLEMFDHAYGNYMEHAYPADELMPLTCRGRvrgqepsrgdvddALGKFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRD 134
Cdd:PTZ00470   74 ESVREAMKHAWEGYKEYAWGHDELRPLTKRHH-------------EWFGLGLTIIDSLDTLKIMGLKKEYKEGRDWVANN 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 135 VNLDNDV--VVSVFETNIRVLGGLLGGHSLAimlkekgeymqwyNDEL-LQMAKQLGYKLLPAFNTTSGLPYPRINLKFG 211
Cdd:PTZ00470  141 LKQSKDTglGVSVFETTIRVLGGLLSAYDLT-------------GDEMyLEKAREIADRLLPAFNEDTGFPASEINLATG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 212 IRKPEARTGTetDTCTACAGTLILEFAALSRFTGATIFEEYARKALDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGA 291
Cdd:PTZ00470  208 RKSYPGWAGG--CSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGA 285

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 292 GIDSYYEYLLKAYVLL--GDDSFLERFNTHYDAIMR-----------YISQppLLLDVHIHKpmlnartwMDALLAFFPG 358
Cdd:PTZ00470  286 LGDSYYEYLLKQWLYTngREERYRRLFVESAKGIIEhlykrspkgltYIAE--MDGGSLTNK--------MEHLACFAGG 355

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 359 LQVLKGDIRPA---------IETHEML----YQV--IKKHNFLPEAFTTD-------FRVHWAQHPLRPEFAESTYFLYK 416
Cdd:PTZ00470  356 MFALGAAINITpddeksaryMEVGEEVtktcYETyaTSPTGLGPEIFHFDpnsgdisPNVHDSHYILRPETVESIFILYR 435

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 417 ATGDPYYLEVGKTLIENLNKYARVPCGFAAMKDVRT--GSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDieDYIFTTEA 494
Cdd:PTZ00470  436 LTGDPKYREWAWKIFQAIEKHCKTENGYSGLKNVLTvhPQQDDFQESFFLAETLKYLYLLFQPDHVIPLD--KYVFNTEA 513


                  ....*
gi 2009550900 495 HLLPL 499
Cdd:PTZ00470  514 HPIPI 518
T9SSA_dep_M36 NF038113
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family ...
 669-793 1.78e-17

T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal T9SS type A sorting domain (see TIGR04131).


Pssm-ID: 468356 [Multi-domain]  Cd Length: 868  Bit Score: 87.79  E-value: 1.78e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 669 PAQFGPDLSKHKETRGFV----ASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSss 744
Cdd:NF038113  428 RAGFGPRLPDAPITGDLAlatdSSPDPNDGCDPILNAAALAGKIAVIRRGSCEFAVKVLNAQNAGAIAVIIVNNVPGE-- 505

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2009550900 745 dtaPLFQMAGDgkDTDDIKIPMLFLFSKEGSIILDAVREYEEVEVLLSD 793
Cdd:NF038113  506 ---PIVMGGGD--TGPPITIPSIMISQADGEAIITALNNGETVNVTLKD 549
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 664-805 2.26e-15

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 81.24  E-value: 2.26e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  664 VLTAGPAQFGP---DLskhkeTRGFV----ASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVI 736
Cdd:NF038112   502 VYEAGSASFGPqafDV-----TGDVVlapdGTGSDTDGCTPFTNAAEVAGKIALIDRGTCDFTVKALNAQNAGAIGVIIA 576

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  737 DDNEGSSSDTAplfqmagdGKDTdDIKIPMLfLFSKEGSIILDAVREYEEVEV-LLSDKAKDRDPEMENE 805
Cdd:NF038112   577 NNAAGAAPGLG--------GTDP-AVTIPAL-SITQADGNAWKAALANGPVTVrLRREPALDRDGTLDNG 636
PA pfam02225
PA domain; The PA (Protease associated) domain is found as an insert domain in diverse ...
 684-777 1.34e-14

PA domain; The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor Swiss:O22925 and members of the RZF family Swiss:O43567. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors.


Pssm-ID: 460499 [Multi-domain]  Cd Length: 91  Bit Score: 69.85  E-value: 1.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 684 GFVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTaplfQMAGDGKDTDDIK 763
Cdd:pfam02225   2 GPLVLAPGCYAGDGIPADFDVKGKIVLVRCTFGFRAEKVRNAQAAGAAGVIIYNNVEGLGGPP----GAGGNELYPDGIY 77

                          90
                  ....*....|....
gi 2009550900 764 IPMLFLFSKEGSII 777
Cdd:pfam02225  78 IPAVGVSRADGEAL 91
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 792-900 1.54e-05

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 49.14  E-value: 1.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 792 SDKAKDRDPEMENEEQPSSENDSQSAEQIASRSQEIDLVDQESPEESSVNSHPESLSPVDTDSaASVSSSEQDSNPVENL 871
Cdd:NF033609  704 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDS 782

                          90       100
                  ....*....|....*....|....*....
gi 2009550900 872 ETTSLDGECTDLDNQLQEQSETEEDSNPN 900
Cdd:NF033609  783 DSDSDSDSDSDSDSDSDSDSDSDSDSDSD 811
DMP1 pfam07263
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix ...
 797-899 4.15e-04

Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralized dentin. DMP1 is primarily localized in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralized matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown.


Pssm-ID: 462128 [Multi-domain]  Cd Length: 519  Bit Score: 44.15  E-value: 4.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 797 DRDPEMENEEQPSSENDSQSAEQIA-SRSQEiDLVD----QESPEESSVNSHPESLS-PVDTDSAASVSSSEQDSNPVEN 870
Cdd:pfam07263 379 DSDSSEEDSLSTFSSSESESREEQAdSESNE-SLRSseesPESSEDENSSSQEGLQShSASTESQSEESQSEQDSQSEED 457

                          90       100       110
                  ....*....|....*....|....*....|
gi 2009550900 871 LETTSLDGECTDLD-NQLQEQSETEEDSNP 899
Cdd:pfam07263 458 DESDSQDSSRSKEDsNSTESTSSSEEDGQS 487
LanM-like cd04792
Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins; ...
 237-329 2.38e-03

Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins; LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.


Pssm-ID: 271200 [Multi-domain]  Cd Length: 836  Bit Score: 41.92  E-value: 2.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 237 FAALSRFTGATIFEEYARKALdflwekrqrssNLVGVTINIHTGDWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERF 316
Cdd:cd04792   503 LAALAALTGDEKYRDLARKAL-----------RPLRKLLRDLAADPRSLGIGGFTGLGSILYALSHLARLLGDPELLEDA 571

                          90
                  ....*....|...
gi 2009550900 317 NTHYDAIMRYISQ 329
Cdd:cd04792   572 LELADLLTEAIIE 584
 
Name Accession Description Interval E-value
Glyco_hydro_47 pfam01532
Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyze the ...
 60-499 6.18e-154

Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).


Pssm-ID: 460241  Cd Length: 453  Bit Score: 460.87  E-value: 6.18e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  60 MFDHAYGNYMEHAYPADELMPLTCRGRvrgqepsrgdvdDALGKFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRDVNLDN 139
Cdd:pfam01532   1 AFLHAWDGYKKYAWGHDELRPISGGGN------------DTFGGWGATIVDSLDTLIIMGLTDEFEEAVDWVEKTLDFDK 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 140 DV-VVSVFETNIRVlggllgghsLAIMLkekGEYM--QWYNDELLQMAKQLGYKLLPAFNTTSGLPYPRINLKFGIRKPE 216
Cdd:pfam01532  69 DStEVSVFETTIRY---------LGGLL---SAYDlsGDGDDVLLEKAVDLADRLLPAFDTPTGIPYPRVNLKTGKGGNG 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 217 ARTGTetDTCTACAGTLILEFAALSRFTGATIFEEYARKALDFLWEKRQRSS--NLVGVTINIHTGDWVRKDSGVGAGID 294
Cdd:pfam01532 137 HVAGG--ASSLAEAGTLQLEFTRLSQLTGDPKYEDLAQKIMDVLWKNQSRTPlpGLVPIYIDPDTGKFVGSNIGLGARGD 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 295 SYYEYLLKAYVLLG--DDSFLERFNTHYDAIMRYI----SQPPLLLDVHIHKPMLNAR--TWMDALLAFFPGLQVL---- 362
Cdd:pfam01532 215 SYYEYLLKQYLLTGgtDPEYRDMYEEAMDAIKKHLlfrpSTPSDLLFIGELDSGGGGKlsPKMDHLSCFAGGMLALgatl 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 363 ----KGDIRPAIETHEMLYQVIK--KHNFLPEAF--------------TTDFRVHW--AQHPLRPEFAESTYFLYKATGD 420
Cdd:pfam01532 295 glprEGDLELAEKLTEGCYKTYDstPTGLGPEIFyfdpcdedcpwdedKWDFYVKIedPHYLLRPETIESLFYLYRATGD 374

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 421 PYYLEVGKTLIENLNKYARVPCGFAAMKDVR--TGSHEDRMDSFFLAEMFKYLYLLFADKEDIifDIEDYIFTTEAHLLP 498
Cdd:pfam01532 375 PKYREWGWEIFQAIEKYTRTECGYSGLQDVTspPGEKEDNMESFWLAETLKYLYLLFSDDDLL--SLDEWVFNTEAHPLP 452


                  .
gi 2009550900 499 L 499
Cdd:pfam01532 453 V 453
PA_EDEM3_like cd02126
PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This ...
 666-791 1.75e-77

PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239041 [Multi-domain]  Cd Length: 126  Bit Score: 248.04  E-value: 1.75e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 666 TAGPAQFGPDLSKHKETRGFVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSD 745
Cdd:cd02126     1 TAGPAQFGMDLTGDKAGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2009550900 746 TAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAVREYEEVEVLL 791
Cdd:cd02126    81 TAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126
PTZ00470 PTZ00470
glycoside hydrolase family 47 protein; Provisional
 55-499 3.77e-77

glycoside hydrolase family 47 protein; Provisional


Pssm-ID: 240427  Cd Length: 522  Bit Score: 261.20  E-value: 3.77e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  55 NQVLEMFDHAYGNYMEHAYPADELMPLTCRGRvrgqepsrgdvddALGKFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRD 134
Cdd:PTZ00470   74 ESVREAMKHAWEGYKEYAWGHDELRPLTKRHH-------------EWFGLGLTIIDSLDTLKIMGLKKEYKEGRDWVANN 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 135 VNLDNDV--VVSVFETNIRVLGGLLGGHSLAimlkekgeymqwyNDEL-LQMAKQLGYKLLPAFNTTSGLPYPRINLKFG 211
Cdd:PTZ00470  141 LKQSKDTglGVSVFETTIRVLGGLLSAYDLT-------------GDEMyLEKAREIADRLLPAFNEDTGFPASEINLATG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 212 IRKPEARTGTetDTCTACAGTLILEFAALSRFTGATIFEEYARKALDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGA 291
Cdd:PTZ00470  208 RKSYPGWAGG--CSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGA 285

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 292 GIDSYYEYLLKAYVLL--GDDSFLERFNTHYDAIMR-----------YISQppLLLDVHIHKpmlnartwMDALLAFFPG 358
Cdd:PTZ00470  286 LGDSYYEYLLKQWLYTngREERYRRLFVESAKGIIEhlykrspkgltYIAE--MDGGSLTNK--------MEHLACFAGG 355

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 359 LQVLKGDIRPA---------IETHEML----YQV--IKKHNFLPEAFTTD-------FRVHWAQHPLRPEFAESTYFLYK 416
Cdd:PTZ00470  356 MFALGAAINITpddeksaryMEVGEEVtktcYETyaTSPTGLGPEIFHFDpnsgdisPNVHDSHYILRPETVESIFILYR 435

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 417 ATGDPYYLEVGKTLIENLNKYARVPCGFAAMKDVRT--GSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDieDYIFTTEA 494
Cdd:PTZ00470  436 LTGDPKYREWAWKIFQAIEKHCKTENGYSGLKNVLTvhPQQDDFQESFFLAETLKYLYLLFQPDHVIPLD--KYVFNTEA 513


                  ....*
gi 2009550900 495 HLLPL 499
Cdd:PTZ00470  514 HPIPI 518
PA_C_RZF_like cd02123
PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA ...
 669-794 5.36e-24

PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239038 [Multi-domain]  Cd Length: 153  Bit Score: 98.95  E-value: 5.36e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 669 PAQFGPDLSKHKEtRGFVASSKPYNGCSELTNPEAVMG----KIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSss 744
Cdd:cd02123    28 PANFGPIPPGSGL-KGVLVVAEPLNACSPIENPPLNSNasgsFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESND-- 104

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2009550900 745 dtapLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAVReYEEVEVLLSDK 794
Cdd:cd02123   105 ----LISMSGNDQEIKGIDIPSVFVGKSTGEILKKYAS-YEKGVILIPDL 149
PA cd00538
PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction ...
 664-791 1.89e-21

PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2.


Pssm-ID: 238300 [Multi-domain]  Cd Length: 126  Bit Score: 90.65  E-value: 1.89e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 664 VLTAGPAQFGPDLSKHKETRGFVASSKPYNGCSELT---NPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDne 740
Cdd:cd00538     2 VILATTGYAGSALLFNPPSSPVGVVAGPLVGCGYGTtddSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNN-- 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2009550900 741 gsssDTAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAVREYEEVEVLL 791
Cdd:cd00538    80 ----GDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKTVTVDL 126
PA_subtilisin_1 cd04818
PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. ...
 668-791 6.29e-20

PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.


Pssm-ID: 240122 [Multi-domain]  Cd Length: 118  Bit Score: 86.23  E-value: 6.29e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 668 GPAQFGPDLSKhkETRGFV----ASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGss 743
Cdd:cd04818     1 VSAGFGPALTN--VTADVVlagaAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAG-- 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2009550900 744 sdtAPLFQMAGDGkdtDDIKIPMLFLFSKEGSIILDAVREYEEVEVLL 791
Cdd:cd04818    77 ---GAPITMGGDD---PDITIPAVMISQADGDALKAALAAGGTVTVTL 118
T9SSA_dep_M36 NF038113
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family ...
 669-793 1.78e-17

T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal T9SS type A sorting domain (see TIGR04131).


Pssm-ID: 468356 [Multi-domain]  Cd Length: 868  Bit Score: 87.79  E-value: 1.78e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 669 PAQFGPDLSKHKETRGFV----ASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSss 744
Cdd:NF038113  428 RAGFGPRLPDAPITGDLAlatdSSPDPNDGCDPILNAAALAGKIAVIRRGSCEFAVKVLNAQNAGAIAVIIVNNVPGE-- 505

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2009550900 745 dtaPLFQMAGDgkDTDDIKIPMLFLFSKEGSIILDAVREYEEVEVLLSD 793
Cdd:NF038113  506 ---PIVMGGGD--TGPPITIPSIMISQADGEAIITALNNGETVNVTLKD 549
PA_GO-like cd02132
PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on ...
 665-791 1.18e-16

PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239047 [Multi-domain]  Cd Length: 139  Bit Score: 77.46  E-value: 1.18e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 665 LTAGPAQFGPDL--SKHKETRGFVASSKPYNGCSELTNPeaVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEgs 742
Cdd:cd02132    19 LVGVTARFGASLpsKEDNANKTRAVLANPLDCCSPSTSK--LSGSIALVERGECAFTEKAKIAEAGGASALLIINDQE-- 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2009550900 743 ssdtaPLFQMAGDGKDTD-DIKIPMLFLFSKEGSIILDAVREYEEVEVLL 791
Cdd:cd02132    95 -----ELYKMVCEDNDTSlNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139
PA_hPAP21_like cd02127
PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted ...
 671-783 1.49e-16

PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239042 [Multi-domain]  Cd Length: 118  Bit Score: 76.64  E-value: 1.49e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 671 QFGPDLSKHKETRGFVASsKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTaplF 750
Cdd:cd02127     1 DFGTIFNTRYKHVPLVPA-DPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYY---V 76

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2009550900 751 QMAGDgKDTDDIKIPMLFLFSKEGSIILDAVRE 783
Cdd:cd02127    77 EMIQD-DSSRRADIPAAFLLGKNGYMIRKTLER 108
myxo_dep_M36 NF038112
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ...
 664-805 2.26e-15

myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.


Pssm-ID: 468355 [Multi-domain]  Cd Length: 1597  Bit Score: 81.24  E-value: 2.26e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  664 VLTAGPAQFGP---DLskhkeTRGFV----ASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVI 736
Cdd:NF038112   502 VYEAGSASFGPqafDV-----TGDVVlapdGTGSDTDGCTPFTNAAEVAGKIALIDRGTCDFTVKALNAQNAGAIGVIIA 576

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900  737 DDNEGSSSDTAplfqmagdGKDTdDIKIPMLfLFSKEGSIILDAVREYEEVEV-LLSDKAKDRDPEMENE 805
Cdd:NF038112   577 NNAAGAAPGLG--------GTDP-AVTIPAL-SITQADGNAWKAALANGPVTVrLRREPALDRDGTLDNG 636
PA pfam02225
PA domain; The PA (Protease associated) domain is found as an insert domain in diverse ...
 684-777 1.34e-14

PA domain; The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor Swiss:O22925 and members of the RZF family Swiss:O43567. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors.


Pssm-ID: 460499 [Multi-domain]  Cd Length: 91  Bit Score: 69.85  E-value: 1.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 684 GFVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTaplfQMAGDGKDTDDIK 763
Cdd:pfam02225   2 GPLVLAPGCYAGDGIPADFDVKGKIVLVRCTFGFRAEKVRNAQAAGAAGVIIYNNVEGLGGPP----GAGGNELYPDGIY 77

                          90
                  ....*....|....
gi 2009550900 764 IPMLFLFSKEGSII 777
Cdd:pfam02225  78 IPAVGVSRADGEAL 91
PA_C5a_like cd02133
PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a ...
 704-789 8.59e-11

PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239048 [Multi-domain]  Cd Length: 143  Bit Score: 60.76  E-value: 8.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 704 VMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGsssdtapLFQMAGDGKdtddIKIPMLFLfSKE-GSIILDAVR 782
Cdd:cd02133    46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDG-------LIPGTLGEA----VFIPVVFI-SKEdGEALKAALE 113


                  ....*..
gi 2009550900 783 EYEEVEV 789
Cdd:cd02133   114 SSKKLTF 120
PA_1 cd04813
PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. ...
 670-768 8.87e-11

PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuolar sorting receptors such as Pisum sativum BP-80, vi) prostate-specific membrane antigen (PSMA), vii) yeast aminopeptidase Y viii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, ix) various subtilisin-like proteases such as Cucumisin from the juice of melon fruits, and x) human TfR (transferrin receptor) 1 and human TfR2. The proteins listed above belong to other subgroups; relatively little is known about proteins in this subgroup.


Pssm-ID: 240117 [Multi-domain]  Cd Length: 117  Bit Score: 60.09  E-value: 8.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 670 AQFGPDLsKHKETRGFvaSSKPYNGCSELTNPEaVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSssdtaPL 749
Cdd:cd04813     8 ASFSPIL-NPHLRGSY--KVSPTDACSLQEHAE-IDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGR-----GL 78

                          90
                  ....*....|....*....
gi 2009550900 750 FQMAGDGkDTDDIKIPMLF 768
Cdd:cd04813    79 ITMFSNG-DTDNVTIPAMF 96
PA_ScAPY_like cd02130
PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae ...
 694-746 4.02e-09

PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239045 [Multi-domain]  Cd Length: 122  Bit Score: 55.34  E-value: 4.02e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2009550900 694 GCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVID-DNEGSSSDT 746
Cdd:cd02130    33 GCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNnVPAGGLSGT 86
PA_GRAIL_like cd02122
PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain ...
 672-757 1.33e-07

PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase 1). hGoliath and GRAIL both have the property of self-ubiquitination. hGoliath is expressed in leukocytes; its expression and localization is not modified in leukemia. GREUL1 may play a role in the generation of anterior ectoderm. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239037 [Multi-domain]  Cd Length: 138  Bit Score: 51.53  E-value: 1.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 672 FGPDlSKHKETRGFVA---SSKPYNGCSELTNPEAVMGK---IALIQRGQCMFAEKARNIQNAGAiGGIVIDDNEGSSSD 745
Cdd:cd02122    22 YGEH-SPKEEAKGLVVvpdPPNDHYGCDPDTRFPIPPNGepwIALIQRGNCTFEEKIKLAAERNA-SAVVIYNNPGTGNE 99

                          90
                  ....*....|..
gi 2009550900 746 TaplFQMAGDGK 757
Cdd:cd02122   100 T---VKMSHPGT 108
PA_VSR cd02125
PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This ...
 674-791 1.87e-06

PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239040 [Multi-domain]  Cd Length: 127  Bit Score: 47.86  E-value: 1.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 674 PDlSKHKETRGFVASSKPYNGCSeltnpeAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEgsssdtAPLFQM- 752
Cdd:cd02125    18 PK-ENRTGCKEFDVFFKPKKSEP------GRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD------EPLLTMd 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2009550900 753 ----AGDGKDTDDIKIPMLFLFSKEGSIILDAVREYEEVEVLL 791
Cdd:cd02125    85 tpeeSGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
 792-900 1.54e-05

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 49.14  E-value: 1.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 792 SDKAKDRDPEMENEEQPSSENDSQSAEQIASRSQEIDLVDQESPEESSVNSHPESLSPVDTDSaASVSSSEQDSNPVENL 871
Cdd:NF033609  704 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDSDS 782

                          90       100
                  ....*....|....*....|....*....
gi 2009550900 872 ETTSLDGECTDLDNQLQEQSETEEDSNPN 900
Cdd:NF033609  783 DSDSDSDSDSDSDSDSDSDSDSDSDSDSD 811
PA_hSPPL_like cd02129
PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like ...
 701-769 1.66e-05

PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239044 [Multi-domain]  Cd Length: 120  Bit Score: 45.07  E-value: 1.66e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2009550900 701 PEAVMGKIALIQRGQCMFAEKARNIQNAGAiGGIVIDDNEGsssdtapLFQMAGDGKDTDDIKIPMLFL 769
Cdd:cd02129    40 PGGLKGKAVVVMRGNCTFYEKARLAQSLGA-EGLLIVSRER-------LVPPSGNRSEYEKIDIPVALL 100
PA_PoS1_like cd02124
PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA ...
 688-789 9.03e-05

PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239039  Cd Length: 129  Bit Score: 43.09  E-value: 9.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 688 SSKPYNGCSELtnPEAVM---GKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSssdtaplfqMAGDGKDTDDIKI 764
Cdd:cd02124    37 TSVADDACQPL--PDDTPdlsGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP---------TDQVGSDADSIIA 105

                          90       100
                  ....*....|....*....|....*
gi 2009550900 765 PMLflfSKEGSIILDAVREYEEVEV 789
Cdd:cd02124   106 AVT---PEDGEAWIDALAAGSNVTV 127
PA_subtilisin_like cd02120
PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This ...
 672-783 3.18e-04

PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 239035 [Multi-domain]  Cd Length: 126  Bit Score: 41.63  E-value: 3.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 672 FGPDLSKHKETRGFVASSKPYNG-CSELT-NPEAVMGKIALIQRGQ-CMFAEKARNIQNAGAIGGIVIDDNEGsssdtap 748
Cdd:cd02120    16 YPGNLKTYPLVYKSANSGDVDASlCLPGSlDPSKVKGKIVLCDRGGnTSRVAKGDAVKAAGGAGMILANDPTD------- 88

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2009550900 749 lfqmaGDGKDTDDIKIPMLFLFSKEGSIILDAVRE 783
Cdd:cd02120    89 -----GLDVVADAHVLPAVHVDYEDGTAILSYINS 118
DMP1 pfam07263
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix ...
 797-899 4.15e-04

Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralized dentin. DMP1 is primarily localized in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralized matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown.


Pssm-ID: 462128 [Multi-domain]  Cd Length: 519  Bit Score: 44.15  E-value: 4.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 797 DRDPEMENEEQPSSENDSQSAEQIA-SRSQEiDLVD----QESPEESSVNSHPESLS-PVDTDSAASVSSSEQDSNPVEN 870
Cdd:pfam07263 379 DSDSSEEDSLSTFSSSESESREEQAdSESNE-SLRSseesPESSEDENSSSQEGLQShSASTESQSEESQSEQDSQSEED 457

                          90       100       110
                  ....*....|....*....|....*....|
gi 2009550900 871 LETTSLDGECTDLD-NQLQEQSETEEDSNP 899
Cdd:pfam07263 458 DESDSQDSSRSKEDsNSTESTSSSEEDGQS 487
PA_SaNapH_like cd04816
PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus ...
 704-765 4.25e-04

PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.


Pssm-ID: 240120 [Multi-domain]  Cd Length: 122  Bit Score: 41.16  E-value: 4.25e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2009550900 704 VMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSsdTAPLFqmagdGKDTDDIKIP 765
Cdd:cd04816    42 VKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG--TAGTL-----GAPNIDLKVP 96
DMP1 pfam07263
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix ...
 792-898 9.22e-04

Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralized dentin. DMP1 is primarily localized in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralized matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown.


Pssm-ID: 462128 [Multi-domain]  Cd Length: 519  Bit Score: 42.99  E-value: 9.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 792 SDKAKDRDPEMENEEQPSSENDSQSAEQIASRSQEIDLVDQESPEES-------SVNSHPESLSPVDTDSAASVSSSEQD 864
Cdd:pfam07263 308 SREDSKSESQEDSEESQSQEDSQNSQDPSSESSQEADLPSQESSSESqeevvseSRGDNPDNTSSSEEDQEDSDSSEEDS 387

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2009550900 865 SNPVENLETTS----LDGECTDLDNQLQEQSETEEDSN 898
Cdd:pfam07263 388 LSTFSSSESESreeqADSESNESLRSSEESPESSEDEN 425
LanM-like cd04792
Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins; ...
 237-329 2.38e-03

Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins; LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.


Pssm-ID: 271200 [Multi-domain]  Cd Length: 836  Bit Score: 41.92  E-value: 2.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2009550900 237 FAALSRFTGATIFEEYARKALdflwekrqrssNLVGVTINIHTGDWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERF 316
Cdd:cd04792   503 LAALAALTGDEKYRDLARKAL-----------RPLRKLLRDLAADPRSLGIGGFTGLGSILYALSHLARLLGDPELLEDA 571

                          90
                  ....*....|...
gi 2009550900 317 NTHYDAIMRYISQ 329
Cdd:cd04792   572 LELADLLTEAIIE 584
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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