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lama1 laminin, alpha 1 [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120812054, updated on 18-Jun-2024

Summary

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Gene symbol
lama1
Gene description
laminin, alpha 1
See related
Ensembl:ENSGACG00000032027
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
Orthologs
human zebrafish all
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Genomic context

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See lama1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
39
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 21 NC_053232.1 (17287670..17299133, complement)

Chromosome 21 - NC_053232.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 200C-like Neighboring gene piezo-type mechanosensitive ion channel component 2-like Neighboring gene activin receptor type-2B-like Neighboring gene xylulokinase homolog (H. influenzae)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053232.1 Chromosome 21 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053232.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    17287670..17299133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040167835.1 → XP_040023769.1  LOW QUALITY PROTEIN: laminin subunit alpha-1

    Related
    ENSGACT00000076035.1
    Conserved Domains (5) summary
    smart00136
    Location:16 → 266
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:939 → 983
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:890 → 937
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam06008
    Location:1560 → 1774
    Laminin_I; Laminin Domain I
    cl02548
    Location:1203 → 1332
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein Strain
Heading Accession and Version

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