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lama1 laminin, alpha 1 [ Xiphias gladius (swordfish) ]

Gene ID: 120790020, updated on 8-May-2024

Summary

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Gene symbol
lama1
Gene description
laminin, alpha 1
See related
EnsemblRapid:ENSXGLG00000001460
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
human zebrafish all
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Genomic context

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See lama1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
64
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 5 NC_053404.1 (23582145..23618429, complement)

Chromosome 5 - NC_053404.1Genomic Context describing neighboring genes Neighboring gene piezo-type mechanosensitive ion channel component 2-like Neighboring gene erythrocyte membrane protein band 4.1-like 3a Neighboring gene uncharacterized LOC120789852

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053404.1 Chromosome 5 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053404.1 Reference ASM1685928v1 Primary Assembly

    Range
    23582145..23618429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040127259.1 → XP_039983193.1  laminin subunit alpha-1 isoform X2

    Conserved Domains (8) summary
    smart00136
    Location:16 → 266
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:939 → 983
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG3206
    Location:1894 → 2114
    GumC; Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis]
    cd00055
    Location:890 → 937
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2300 → 2456
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1563 → 1816
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2007 → 2137
    Laminin_II; Laminin Domain II
    cl02548
    Location:1200 → 1332
    Laminin_B; Laminin B (Domain IV)

  2. XM_040127258.1 → XP_039983192.1  laminin subunit alpha-1 isoform X1

    Related
    ENSXGLP00000003602.1, ENSXGLT00000003867.1
    Conserved Domains (8) summary
    smart00136
    Location:16 → 266
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:939 → 983
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    COG3206
    Location:1895 → 2115
    GumC; Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis]
    cd00055
    Location:890 → 937
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2301 → 2457
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1563 → 1816
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2008 → 2138
    Laminin_II; Laminin Domain II
    cl02548
    Location:1200 → 1332
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
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