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LAMA1 laminin subunit alpha 1 [ Pteropus giganteus (Indian flying fox) ]

Gene ID: 120588351, updated on 30-Mar-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
See related
EnsemblRapid:ENSPGIG00000020372
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus giganteus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
65
Annotation release Status Assembly Chr Location
100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024340849.1 (45481656..45625340, complement)

NW_024340849.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 28 Neighboring gene proteasome subunit beta type-6-like Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC120588371 Neighboring gene 5S ribosomal RNA Neighboring gene leucine rich repeat containing 30 Neighboring gene 40S ribosomal protein S6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024340849 Unplaced Scaffold Reference Ma_sr-lr_union100

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ma_sr-lr_union100

Genomic

  1. NW_024340849.1 Reference Ma_sr-lr_union100

    Range
    45481656..45625340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039845833.1 → XP_039701767.1  laminin subunit alpha-1 isoform X2

    Conserved Domains (9) summary
    smart00180
    Location:953 → 997
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:567 → 697
    LamB; Laminin B domain
    smart00282
    Location:2144 → 2283
    LamG; Laminin G domain
    COG1196
    Location:1741 → 2100
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:903 → 950
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2310 → 2466
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1577 → 1823
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2015 → 2147
    Laminin_II; Laminin Domain II
    cl02806
    Location:80 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_039845828.1 → XP_039701762.1  laminin subunit alpha-1 isoform X1

    Related
    ENSPGIP00000017735.1, ENSPGIT00000027029.1
    Conserved Domains (9) summary
    smart00136
    Location:19 → 271
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:954 → 998
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:568 → 698
    LamB; Laminin B domain
    smart00282
    Location:2145 → 2284
    LamG; Laminin G domain
    COG1196
    Location:1742 → 2101
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:904 → 951
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2311 → 2467
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1578 → 1824
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2016 → 2148
    Laminin_II; Laminin Domain II

  3. XM_039845837.1 → XP_039701771.1  laminin subunit alpha-1 isoform X3

    Conserved Domains (9) summary
    smart00136
    Location:19 → 271
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:954 → 998
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00281
    Location:568 → 698
    LamB; Laminin B domain
    smart00282
    Location:2145 → 2284
    LamG; Laminin G domain
    COG1196
    Location:1742 → 2101
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:904 → 951
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2311 → 2467
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1578 → 1824
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2016 → 2148
    Laminin_II; Laminin Domain II
Nucleotide Protein
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