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LOC120492170 laminin subunit alpha-2-like [ Pimephales promelas (fathead minnow) ]

Gene ID: 120492170, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120492170
Gene description
laminin subunit alpha-2-like
Locus tag
F2P79_025795
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
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Genomic context

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See LOC120492170 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121384.1 (5268..93669, complement)

NW_024121384.1Genomic Context describing neighboring genes Neighboring gene enoyl-[acyl-carrier-protein] reductase, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121384 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2-like
Names
Laminin-like protein epi-1
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121384.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    5268..93669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039690326.1 → XP_039546260.1  laminin subunit alpha-2-like

    Conserved Domains (7) summary
    smart00180
    Location:224 → 261
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:865 → 1007
    LamG; Laminin G domain
    COG1196
    Location:424 → 781
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:116 → 164
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:1499 → 1649
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:292 → 548
    Laminin_I; Laminin Domain I
    pfam06009
    Location:733 → 868
    Laminin_II; Laminin Domain II
Nucleotide Protein
Heading Accession and Version

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