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LOC120303759 desmocollin-2-like [ Crotalus tigris (Tiger rattlesnake) ]

Gene ID: 120303759, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120303759
Gene description
desmocollin-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Crotalus tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
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Genomic context

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See LOC120303759 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100678.1 (5150812..5185205)

NW_024100678.1Genomic Context describing neighboring genes Neighboring gene desmoglein-1-alpha-like Neighboring gene desmocollin-1-like Neighboring gene uncharacterized LOC120303814 Neighboring gene protein ADP-ribosylarginine hydrolase-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100678 Unplaced Scaffold Reference ASM1654583v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical part of cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in desmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intercalated disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
desmocollin-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654583v1

Genomic

  1. NW_024100678.1 Reference ASM1654583v1

    Range
    5150812..5185205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039333518.1 → XP_039189452.1  desmocollin-2-like isoform X1

    Conserved Domains (4) summary
    cd11304
    Location:249 → 354
    Cadherin_repeat; Cadherin tandem repeat domain
    smart01055
    Location:33 → 113
    Cadherin_pro; Cadherin prodomain like
    pfam00028
    Location:143 → 253
    Cadherin; Cadherin domain
    pfam01049
    Location:862 → 906
    Cadherin_C; Cadherin cytoplasmic region

  2. XM_039333519.1 → XP_039189453.1  desmocollin-2-like isoform X2

    Conserved Domains (3) summary
    cd11304
    Location:249 → 354
    Cadherin_repeat; Cadherin tandem repeat domain
    smart01055
    Location:33 → 113
    Cadherin_pro; Cadherin prodomain like
    pfam00028
    Location:143 → 253
    Cadherin; Cadherin domain
Nucleotide Protein
Heading Accession and Version

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