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LOC119876828 interferon alpha-1/2-like [ Canis lupus familiaris (dog) ]

Gene ID: 119876828, updated on 23-Nov-2023

Summary

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Gene symbol
LOC119876828
Gene description
interferon alpha-1/2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See LOC119876828 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (41793189..41793542)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (39523499..39523852)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (40964882..40965235)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (40350590..40350943)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene interferon alpha-1/2 Neighboring gene interferon alpha-1/2-like Neighboring gene interferon alpha-1/2 Neighboring gene interferon, alpha 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type I interferon receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in B cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in B cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in T cell activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in humoral immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in natural killer cell activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of peptidyl-serine phosphorylation of STAT protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to exogenous dsRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon alpha-1/2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    41793189..41793542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682619.1 → XP_038538547.1  interferon alpha-1/2-like

    Conserved Domains (1) summary
    pfam00143
    Location:13 → 113
    Interferon; Interferon alpha/beta domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    40350590..40350943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038617166.1 → XP_038473094.1  interferon alpha-1/2-like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    40964882..40965235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038553282.1 → XP_038409210.1  interferon alpha-1/2-like

    Conserved Domains (1) summary
    pfam00143
    Location:13 → 113
    Interferon; Interferon alpha/beta domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39523499..39523852
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668046.1 → XP_038523974.1  interferon alpha-1/2-like

    Conserved Domains (1) summary
    pfam00143
    Location:13 → 113
    Interferon; Interferon alpha/beta domain
Nucleotide Protein
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