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lama2 laminin, alpha 2 [ Nematolebias whitei (Rio pearlfish) ]

Gene ID: 119418596, updated on 21-Mar-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematolebias whitei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Nematolebias
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
52
Annotation release Status Assembly Chr Location
100.20210725 current NemWhi1 (GCF_014905685.2) 12 NC_056509.1 (41040256..41127568)
100 previous assembly NemWhi1 (GCF_014905685.1) Unplaced Scaffold NW_023618557.1 (41040256..41127568)

Chromosome 12 - NC_056509.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119418597 Neighboring gene uncharacterized LOC119418598 Neighboring gene regulator of G protein signaling 6 Neighboring gene signal-induced proliferation-associated 1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematolebias whitei Updated Annotation Release 100.20210725

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NemWhi1

Genomic

  1. NC_056509.1 Reference NemWhi1

    Range
    41040256..41127568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037685915.1 → XP_037541843.1  laminin subunit alpha-2

    Conserved Domains (10) summary
    smart00180
    Location:94 → 138
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:1443 → 1579
    LamG; Laminin G domain
    COG1196
    Location:850 → 1241
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:140 → 185
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2076 → 2227
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:678 → 931
    Laminin_I; Laminin Domain I
    pfam06009
    Location:1131 → 1252
    Laminin_II; Laminin Domain II
    pfam00052
    Location:360 → 498
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:233 → 290
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:1911 → 2038
    Laminin_G_1; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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