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Snx27 sorting nexin 27 [ Rhipicephalus microplus (southern cattle tick) ]

Gene ID: 119188297, updated on 2-Jul-2024

Summary

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Gene symbol
Snx27
Gene description
sorting nexin 27
See related
VectorBase:LOC119188297; EnsemblRapid:LOC119188297
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhipicephalus microplus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus
Orthologs
fruit fly all
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Genomic context

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See Snx27 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1333972v1 (GCF_013339725.1) 1 NC_051165.1 (274915339..274933109)

Chromosome 1 - NC_051165.1Genomic Context describing neighboring genes Neighboring gene rabconnectin-3 alpha Neighboring gene protein C1orf43 homolog Neighboring gene uncharacterized LOC119188298 Neighboring gene 3'-5' RNA helicase YTHDC2-like Neighboring gene DTW domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051165.1 Chromosome 1 Reference ASM1333972v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-27-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhipicephalus microplus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1333972v1 Primary Assembly

Genomic

  1. NC_051165.1 Reference ASM1333972v1 Primary Assembly

    Range
    274915339..274933109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037436268.1 → XP_037292165.1  sorting nexin-27-like

    UniProtKB/TrEMBL
    A0A9J6F1E5
    Related
    XP_037292165.1, XM_037436268.1
    Conserved Domains (4) summary
    cd06886
    Location:151 → 256
    PX_SNX27; The phosphoinositide binding Phox Homology domain of Sorting Nexin 27
    cd00992
    Location:32 → 124
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd13338
    Location:417 → 518
    FERM-like_C_SNX27; Atypical FERM-like domain C-lobe of Sorting nexin 27
    cd01777
    Location:265 → 356
    FERM_F1_SNX27; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in sorting nexin protein 27 (SNX27)
Nucleotide Protein
Heading Accession and Version

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