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LOC119164956 laminin subunit alpha-1-like [ Rhipicephalus microplus (southern cattle tick) ]

Gene ID: 119164956, updated on 1-Jul-2024

Summary

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Gene symbol
LOC119164956
Gene description
laminin subunit alpha-1-like
See related
VectorBase:LOC119164956; EnsemblRapid:LOC119164956
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhipicephalus microplus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus
Orthologs
fruit fly all
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Genomic context

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See LOC119164956 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
65
Annotation release Status Assembly Chr Location
100 current ASM1333972v1 (GCF_013339725.1) 3 NC_051167.1 (119411616..119539456)

Chromosome 3 - NC_051167.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119163660 Neighboring gene protein grainyhead-like Neighboring gene TNF receptor-associated factor 3-like Neighboring gene TNF receptor-associated factor 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051167.1 Chromosome 3 Reference ASM1333972v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhipicephalus microplus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1333972v1 Primary Assembly

Genomic

  1. NC_051167.1 Reference ASM1333972v1 Primary Assembly

    Range
    119411616..119539456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037417153.1 → XP_037273050.1  LOW QUALITY PROTEIN: laminin subunit alpha-1-like

    Related
    XP_037273050.1, XM_037417153.1
    Conserved Domains (11) summary
    smart00180
    Location:1115 → 1160
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2316 → 2456
    LamG; Laminin G domain
    COG1196
    Location:1818 → 2209
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:1015 → 1064
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3072 → 3230
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1746 → 1981
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2180 → 2309
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1378 → 1517
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1066 → 1112
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:83 → 326
    Laminin_N; Laminin N-terminal (Domain VI)
    cl21504
    Location:1256 → 1310
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
Nucleotide Protein
Heading Accession and Version

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