U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

lama2 laminin, alpha 2 [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119012430, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
lama2
Gene description
laminin, alpha 2
See related
EnsemblRapid:ENSALTG00010009777
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See lama2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
75
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 22 NC_051060.1 (10861313..11054639, complement)

Chromosome 22 - NC_051060.1Genomic Context describing neighboring genes Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene regulator of G protein signaling 6 Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene protein tyrosine phosphatase receptor type K

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_051060.1 Chromosome 22 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051060.1 Reference fAcaLat1.1 Primary Assembly

    Range
    10861313..11054639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037086256.1 → XP_036942151.1  laminin subunit alpha-2 isoform X4

    Related
    ENSALTP00010029186.1, ENSALTT00010031946.1
    Conserved Domains (11) summary
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2151 → 2293
    LamG; Laminin G domain
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2983 → 3134
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:1694 → 1992
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam06008
    Location:1580 → 1831
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2033 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1354
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:997 → 1043
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2816 → 2943
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_037086255.1 → XP_036942150.1  laminin subunit alpha-2 isoform X3

    Related
    ENSALTP00010028807.1, ENSALTT00010031567.1
    Conserved Domains (11) summary
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2151 → 2293
    LamG; Laminin G domain
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2958 → 3109
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:1694 → 1992
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam06008
    Location:1580 → 1831
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2033 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1354
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:997 → 1043
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2791 → 2918
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  3. XM_037086254.1 → XP_036942149.1  laminin subunit alpha-2 isoform X2

    Conserved Domains (11) summary
    smart00180
    Location:950 → 994
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2151 → 2293
    LamG; Laminin G domain
    cd00055
    Location:847 → 899
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2987 → 3138
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:1694 → 1992
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam06008
    Location:1580 → 1831
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2033 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1216 → 1354
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:997 → 1043
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2820 → 2947
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)

  4. XM_037086253.1 → XP_036942148.1  laminin subunit alpha-2 isoform X1

    Conserved Domains (11) summary
    smart00180
    Location:1041 → 1085
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2242 → 2384
    LamG; Laminin G domain
    cd00055
    Location:900 → 944
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3078 → 3229
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR02168
    Location:1785 → 2083
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam06008
    Location:1671 → 1922
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2124 → 2245
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1307 → 1445
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1088 → 1134
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2911 → 3038
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.