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lama1 laminin, alpha 1 [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119008584, updated on 21-Mar-2024

Summary

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Gene symbol
lama1
Gene description
laminin, alpha 1
See related
EnsemblRapid:ENSALTG00010003675
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
Orthologs
human zebrafish all
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Genomic context

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See lama1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
64
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 19 NC_051057.1 (24809824..24838664)

Chromosome 19 - NC_051057.1Genomic Context describing neighboring genes Neighboring gene lethal(3)malignant brain tumor-like protein 4 Neighboring gene uncharacterized LOC119008290 Neighboring gene erythrocyte membrane protein band 4.1-like 3a Neighboring gene piezo-type mechanosensitive ion channel component 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051057.1 Chromosome 19 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051057.1 Reference fAcaLat1.1 Primary Assembly

    Range
    24809824..24838664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037079044.1 → XP_036934939.1  laminin subunit alpha-1 isoform X1

    Related
    ENSALTP00010007805.1, ENSALTT00010009554.1
    Conserved Domains (9) summary
    smart00136
    Location:16 → 266
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:1497 → 1530
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2135 → 2273
    LamG; Laminin G domain
    cd00055
    Location:834 → 885
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2300 → 2456
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1564 → 1817
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2016 → 2139
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1202 → 1347
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:887 → 933
    Laminin_EGF; Laminin EGF domain

  2. XM_037079045.1 → XP_036934940.1  laminin subunit alpha-1 isoform X2

    Conserved Domains (9) summary
    smart00136
    Location:16 → 266
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:1497 → 1530
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2134 → 2272
    LamG; Laminin G domain
    cd00055
    Location:834 → 885
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2299 → 2455
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1564 → 1817
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2015 → 2138
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1202 → 1347
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:887 → 933
    Laminin_EGF; Laminin EGF domain
Nucleotide Protein
Heading Accession and Version

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