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LAMA1 laminin subunit alpha 1 [ Sturnira hondurensis ]

Gene ID: 118989974, updated on 30-Mar-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnira hondurensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Sturnira
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
63
Annotation release Status Assembly Chr Location
100.20210611 current WHU_Shon_v2.1 (GCF_014824575.2) Unplaced Scaffold NW_023513081.1 (3199763..3352328, complement)

NW_023513081.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 28 Neighboring gene interferon-inducible double-stranded RNA-dependent protein kinase activator A-like Neighboring gene uncharacterized LOC118989999 Neighboring gene ribosome production factor 1-like Neighboring gene leucine rich repeat containing 30

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023513081 Unplaced Scaffold Reference WHU_Shon_v2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnira hondurensis Updated Annotation Release 100.20210611

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference WHU_Shon_v2.1

Genomic

  1. NW_023513081.1 Reference WHU_Shon_v2.1

    Range
    3199763..3352328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037050331.1 → XP_036906226.1  laminin subunit alpha-1 isoform X2

    Conserved Domains (9) summary
    smart00136
    Location:21 → 272
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:960 → 1004
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1517 → 1555
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2317 → 2473
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1584 → 1830
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2023 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1227 → 1369
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:911 → 957
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2750 → 2879
    Laminin_G_1; Laminin G domain

  2. XM_037050330.1 → XP_036906225.1  laminin subunit alpha-1 isoform X1

    Conserved Domains (9) summary
    smart00136
    Location:21 → 272
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:960 → 1004
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1517 → 1555
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2317 → 2473
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1584 → 1830
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2023 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1227 → 1369
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:911 → 957
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2751 → 2880
    Laminin_G_1; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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