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LOC118408193 laminin subunit alpha-2-like [ Branchiostoma floridae (Florida lancelet) ]

Gene ID: 118408193, updated on 14-Dec-2023

Summary

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Gene symbol
LOC118408193
Gene description
laminin subunit alpha-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Branchiostoma floridae
Lineage
Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 2
Exon count:
69
Annotation release Status Assembly Chr Location
100 current Bfl_VNyyK (GCF_000003815.2) 2 NC_049980.1 (14637679..14710276)

Chromosome 2 - NC_049980.1Genomic Context describing neighboring genes Neighboring gene slit homolog 1 protein-like Neighboring gene laminin subunit alpha-2-like Neighboring gene uncharacterized LOC118408567 Neighboring gene matrilin-4-like Neighboring gene PAS domain-containing serine/threonine-protein kinase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049980.1 Chromosome 2 Reference Bfl_VNyyK Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bfl_VNyyK Primary Assembly

Genomic

  1. NC_049980.1 Reference Bfl_VNyyK Primary Assembly

    Range
    14637679..14710276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035808830.1 → XP_035664723.1  laminin subunit alpha-2-like

    UniProtKB/TrEMBL
    A0A9J7KLA1, C3ZCS7
    Conserved Domains (11) summary
    PHA03255
    Location:2892 → 3035
    PHA03255; BDLF3; Provisional
    PRK02224
    Location:1747 → 2253
    PRK02224; DNA double-strand break repair Rad50 ATPase
    smart00180
    Location:1082 → 1126
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:3090 → 3221
    LamG; Laminin G domain
    cd00055
    Location:862 → 915
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2470 → 2622
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1728 → 1980
    Laminin_I; Laminin Domain I
    pfam00052
    Location:1346 → 1494
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1033 → 1079
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:35 → 279
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam02210
    Location:2681 → 2820
    Laminin_G_2; Laminin G domain
Nucleotide Protein Strain
Heading Accession and Version

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