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LOC118188260 irregular chiasm C-roughest protein-like [ Stegodyphus dumicola ]

Gene ID: 118188260, updated on 22-Oct-2023

Summary

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Gene symbol
LOC118188260
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:LOC118188260
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegodyphus dumicola
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Eresoidea; Eresidae; Stegodyphus
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Genomic context

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See LOC118188260 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current ASM1061486v1 (GCF_010614865.1) Unplaced Scaffold NW_023313009.1 (119553..348527, complement)

NW_023313009.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF139-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023313009 Unplaced Scaffold Reference ASM1061486v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegodyphus dumicola Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1061486v1

Genomic

  1. NW_023313009.1 Reference ASM1061486v1

    Range
    119553..348527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035358670.1 → XP_035214561.1  irregular chiasm C-roughest protein-like isoform X2

    Related
    XP_035214561.1, XM_035358670.1
    Conserved Domains (4) summary
    smart00410
    Location:66 → 161
    IG_like; Immunoglobulin like
    pfam13927
    Location:267 → 337
    Ig_3; Immunoglobulin domain
    cd00096
    Location:438 → 442
    Ig; Ig strand A [structural motif]
    cl11960
    Location:437 → 533
    Ig; Immunoglobulin domain

  2. XM_035358660.1 → XP_035214551.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_035214551.1, XM_035358660.1
    Conserved Domains (4) summary
    smart00409
    Location:83 → 178
    IG; Immunoglobulin
    pfam13927
    Location:284 → 354
    Ig_3; Immunoglobulin domain
    cd00096
    Location:455 → 459
    Ig; Ig strand A [structural motif]
    cl11960
    Location:454 → 550
    Ig; Immunoglobulin domain

  3. XM_035358693.1 → XP_035214584.1  irregular chiasm C-roughest protein-like isoform X5

    Related
    XP_035214584.1, XM_035358693.1
    Conserved Domains (4) summary
    smart00410
    Location:83 → 178
    IG_like; Immunoglobulin like
    pfam13927
    Location:371 → 437
    Ig_3; Immunoglobulin domain
    cd00096
    Location:455 → 459
    Ig; Ig strand A [structural motif]
    cl11960
    Location:454 → 550
    Ig; Immunoglobulin domain

  4. XM_035358680.1 → XP_035214571.1  irregular chiasm C-roughest protein-like isoform X3

    Related
    XP_035214571.1, XM_035358680.1
    Conserved Domains (4) summary
    smart00409
    Location:83 → 178
    IG; Immunoglobulin
    pfam13927
    Location:284 → 354
    Ig_3; Immunoglobulin domain
    cd00096
    Location:455 → 459
    Ig; Ig strand A [structural motif]
    cl11960
    Location:454 → 550
    Ig; Immunoglobulin domain

  5. XM_035358685.1 → XP_035214576.1  irregular chiasm C-roughest protein-like isoform X4

    Related
    XP_035214576.1, XM_035358685.1
    Conserved Domains (4) summary
    smart00410
    Location:83 → 178
    IG_like; Immunoglobulin like
    pfam13927
    Location:371 → 437
    Ig_3; Immunoglobulin domain
    cd00096
    Location:455 → 459
    Ig; Ig strand A [structural motif]
    cl11960
    Location:454 → 550
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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