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lama2 laminin, alpha 2 [ Etheostoma cragini (Arkansas darter) ]

Gene ID: 117961841, updated on 19-Mar-2024

Summary

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Gene symbol
lama2
Gene description
laminin, alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Etheostoma cragini
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
Orthologs
human zebrafish all
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Genomic context

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See lama2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
77
Annotation release Status Assembly Chr Location
100 current CSU_Ecrag_1.0 (GCF_013103735.1) 18 NC_048424.1 (5728269..5904056, complement)

Chromosome 18 - NC_048424.1Genomic Context describing neighboring genes Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene regulator of G protein signaling 6 Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene protein tyrosine phosphatase receptor type K

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048424.1 Chromosome 18 Reference CSU_Ecrag_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Etheostoma cragini Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSU_Ecrag_1.0

Genomic

  1. NC_048424.1 Reference CSU_Ecrag_1.0

    Range
    5728269..5904056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034900777.1 → XP_034756668.1  laminin subunit alpha-2

    Conserved Domains (11) summary
    smart00180
    Location:1017 → 1061
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2218 → 2360
    LamG; Laminin G domain
    COG1196
    Location:1819 → 2183
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00055
    Location:823 → 875
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3058 → 3209
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1647 → 1900
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2100 → 2221
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1283 → 1421
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:1469 → 1515
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2891 → 3018
    Laminin_G_1; Laminin G domain
    pfam00055
    Location:25 → 270
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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