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LAMA1 laminin subunit alpha 1 [ Pantherophis guttatus ]

Gene ID: 117672658, updated on 19-Mar-2024

Summary

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Gene symbol
LAMA1
Gene description
laminin subunit alpha 1
See related
EnsemblRapid:ENSPGUG00005014893
Gene type
protein coding
RefSeq status
MODEL
Organism
Pantherophis guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Colubrinae; Pantherophis
Orthologs
human mouse all
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Genomic context

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See LAMA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
63
Annotation release Status Assembly Chr Location
RS_2023_10 current CU_Pguttatus_1 (GCF_029531705.1) Unplaced Scaffold NW_026844077.1 (51353336..51447582, complement)
100 previous assembly UNIGE_PanGut_3.0 (GCF_001185365.1) Unplaced Scaffold NW_023010796.1 (21291487..21385782)

NW_026844077.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132709039 Neighboring gene Rho GTPase activating protein 28 Neighboring gene leucine rich repeat containing 30 Neighboring gene nicotinamide phosphoribosyltransferase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029531705.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pguttatus_1

Genomic

  1. NW_026844077.1 Reference CU_Pguttatus_1

    Range
    51353336..51447582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034429509.2 → XP_034285400.1  laminin subunit alpha-1 isoform X4

    UniProtKB/TrEMBL
    A0A6P9D147
    Conserved Domains (11) summary
    smart00136
    Location:22 → 274
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:923 → 967
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2116 → 2255
    LamG; Laminin G domain
    COG0840
    Location:1851 → 2091
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:713 → 761
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2282 → 2438
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1551 → 1754
    Laminin_I; Laminin Domain I
    pfam06009
    Location:1987 → 2120
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1188 → 1330
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:874 → 925
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2728 → 2857
    Laminin_G_1; Laminin G domain

  2. XM_034429508.2 → XP_034285399.1  laminin subunit alpha-1 isoform X3

    UniProtKB/TrEMBL
    A0A6P9CQY3
    Conserved Domains (11) summary
    smart00136
    Location:22 → 274
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:957 → 1001
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2147 → 2286
    LamG; Laminin G domain
    COG0840
    Location:1882 → 2122
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:747 → 795
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2313 → 2469
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1585 → 1785
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2018 → 2151
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1222 → 1364
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:908 → 959
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2759 → 2888
    Laminin_G_1; Laminin G domain

  3. XM_034429507.2 → XP_034285398.1  laminin subunit alpha-1 isoform X2

    UniProtKB/TrEMBL
    A0A6P9CLR6
    Conserved Domains (10) summary
    smart00136
    Location:22 → 274
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:957 → 1001
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2149 → 2288
    LamG; Laminin G domain
    cd00055
    Location:747 → 795
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2315 → 2471
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1585 → 1788
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2021 → 2153
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1222 → 1364
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:908 → 959
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2761 → 2890
    Laminin_G_1; Laminin G domain

  4. XM_034429506.2 → XP_034285397.1  laminin subunit alpha-1 isoform X1

    UniProtKB/TrEMBL
    A0A6P9CQD6
    Related
    ENSPGUP00005021238.1
    Conserved Domains (11) summary
    smart00136
    Location:22 → 274
    LamNT; Laminin N-terminal domain (domain VI)
    smart00180
    Location:957 → 1001
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2150 → 2289
    LamG; Laminin G domain
    COG0840
    Location:1885 → 2125
    Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
    cd00055
    Location:747 → 795
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2316 → 2472
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam06008
    Location:1585 → 1788
    Laminin_I; Laminin Domain I
    pfam06009
    Location:2021 → 2154
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1222 → 1364
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:908 → 959
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:2762 → 2891
    Laminin_G_1; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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